FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262508 through 18771 annotations produced 3 hits

():

Annotation Number : CG32355
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052355
Gbrowse : chr3L:8589739-8592720 (+) // 100.0 //
Probeset : 1630129_at
Accessions : protein= NP_648240;, nucleotide= NM_139983;
FlyMine data for FBgn0052355.
BDGP gene expression has embryonic in situ data for CG32355: 14 pix of staining in 2 body parts.
VDRC has 6 RNAi stocks for FBgn0052355 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	318 ± 12	4 of 4	1.00	None
Head	512 ± 14	4 of 4	1.60	Up
Eye	576 ± 27	4 of 4	1.83	Up
Thoracicoabdominal ganglion	126 ± 4	4 of 4	0.40	Down
Salivary gland	111 ± 8	4 of 4	0.35	Down
Crop	523 ± 9	4 of 4	1.70	Up
Midgut	75 ± 12	4 of 4	0.20	Down
Tubule	76 ± 4	4 of 4	0.20	Down
Hindgut	362 ± 6	4 of 4	1.20	Up
Heart	652 ± 40	4 of 4	2.07	Up
Fat body	38 ± 12	4 of 4	0.12	Down
Ovary	10 ± 1	3 of 4	0.00	Down
Testis	7 ± 0	4 of 4	0.00	Down
Male accessory glands	96 ± 8	4 of 4	0.30	Down
Virgin spermatheca	40 ± 7	4 of 4	0.13	Down
Mated spermatheca	36 ± 5	4 of 4	0.12	Down
Adult carcass	1098 ± 101	4 of 4	3.50	Up
Larval CNS	44 ± 6	4 of 4	0.14	Down
Larval Salivary gland	5 ± 1	2 of 4	0.02	Down
Larval midgut	71 ± 10	4 of 4	0.23	Down
Larval tubule	112 ± 7	4 of 4	0.40	Down
Larval hindgut	303 ± 25	4 of 4	0.96	None
Larval fat body	4 ± 2	0 of 4	0.00	Down
Larval trachea	47 ± 35	3 of 4	0.15	Down
Larval carcass	1473 ± 129	4 of 4	4.68	Up
S2 cells (growing)	2 ± 1	0 of 4	0.01	Down
Whole fly	314 ± 4	4 of 4

():

Annotation Number : CG32353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052353
Gbrowse : chr3L:8583710-8586125 (+) // 100.0 //
Probeset : 1639696_at
Accessions : protein= NP_729392;, nucleotide= NM_168281;
FlyMine data for FBgn0052353.
VDRC has 6 RNAi stocks for FBgn0052353 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 2	0 of 4	0.80	None
Head	6 ± 1	0 of 4	0.90	None
Eye	2 ± 1	0 of 4	0.27	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.40	None
Salivary gland	9 ± 5	0 of 4	1.26	None
Crop	9 ± 2	0 of 4	1.20	None
Midgut	3 ± 2	0 of 4	0.50	None
Tubule	3 ± 0	0 of 4	0.50	Down
Hindgut	8 ± 2	0 of 4	1.10	None
Heart	7 ± 0	0 of 4	0.92	None
Fat body	8 ± 2	0 of 4	1.11	None
Ovary	1 ± 0	0 of 4	0.20	None
Testis	5 ± 0	0 of 4	0.60	None
Male accessory glands	4 ± 3	0 of 4	0.60	None
Virgin spermatheca	4 ± 0	0 of 4	0.53	None
Mated spermatheca	1 ± 0	0 of 4	0.20	None
Adult carcass	15 ± 4	1 of 4	2.00	None
Larval CNS	0 ± 0	0 of 4	0.08	None
Larval Salivary gland	3 ± 1	0 of 4	0.43	None
Larval midgut	2 ± 0	0 of 4	0.29	None
Larval tubule	5 ± 1	0 of 4	0.70	None
Larval hindgut	5 ± 1	2 of 4	0.71	None
Larval fat body	12 ± 2	0 of 4	1.50	None
Larval trachea	1 ± 1	0 of 4	0.24	None
Larval carcass	1 ± 0	0 of 4	0.13	None
S2 cells (growing)	0 ± 0	0 of 4	0.13	None
Whole fly	7 ± 2	1 of 4

():

Annotation Number : CG32352
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052352
Gbrowse : chr3L:8572043-8589409 (+) // 100.0 //
Probeset : 1623199_a_at
Accessions : protein= NP_001163379; /// NP_001163380; /// NP_729389; /// NP_729390; /// NP_729391;, nucleotide= NM_001169908; /// NM_001169909; /// NM_168278; /// NM_168279; /// NM_170629;
FlyMine data for FBgn0052352.
BioGrid reports that CG32352 interacts with CG8604 CG6459 .
VDRC has 6 RNAi stocks for FBgn0052352 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	75 ± 2	4 of 4	0.50	Down
Head	246 ± 4	4 of 4	1.60	Up
Eye	478 ± 17	4 of 4	3.04	Up
Thoracicoabdominal ganglion	96 ± 5	4 of 4	0.60	Down
Salivary gland	428 ± 12	4 of 4	2.72	Up
Crop	358 ± 10	4 of 4	2.30	Up
Midgut	611 ± 18	4 of 4	3.90	Up
Tubule	521 ± 30	4 of 4	3.30	Up
Hindgut	636 ± 9	4 of 4	4.00	Up
Heart	137 ± 7	4 of 4	0.87	None
Fat body	298 ± 28	4 of 4	1.89	Up
Ovary	3 ± 1	0 of 4	0.00	Down
Testis	10 ± 0	1 of 4	0.10	Down
Male accessory glands	35 ± 3	2 of 4	0.20	Down
Virgin spermatheca	251 ± 12	4 of 4	1.60	Up
Mated spermatheca	285 ± 8	4 of 4	1.82	Up
Adult carcass	160 ± 7	4 of 4	1.00	None
Larval CNS	15 ± 2	2 of 4	0.10	Down
Larval Salivary gland	13 ± 5	0 of 4	0.09	Down
Larval midgut	383 ± 67	4 of 4	2.44	Up
Larval tubule	640 ± 9	4 of 4	4.10	Up
Larval hindgut	1270 ± 66	4 of 4	8.07	Up
Larval fat body	26 ± 4	1 of 4	0.20	Down
Larval trachea	18 ± 12	1 of 4	0.12	Down
Larval carcass	29 ± 5	1 of 4	0.19	Down
S2 cells (growing)	23 ± 2	2 of 4	0.15	Down
Whole fly	157 ± 6	4 of 4

Looking for FBgn0262508. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720