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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262509 through 18771 annotations produced 3 hits



():

Annotation Number : CG8779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005629
Gbrowse : chr3L:22991540-23023031 (+) // 99.27 //
Probeset : 1637057_at
Accessions : protein= NP_001036621; /// NP_524218;, nucleotide= NM_001043156; /// NM_079494;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0005629.
Homophila reports that CG8779 is a close match (5e-12) to human gene CAML1;HSAS1;L1CAM (NP_076493), a gene associated with Corpus callosum, partial agenesis of, 304100 (3);CRASH syndrome, 303350 (3);Hydrocephalus due to aqueductal stenosis, 307000 (3);Hydrocephalus with congenital idiopathic intestinal pseudoobstruction, 307000 (3);Hydrocephalus with Hirschsprung disease and cleft palate, 142623 (3);MASA syndrome, 303350 (3).
VDRC has 8 RNAi stocks for FBgn0005629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 34 of 4 0.90None
Head64 54 of 4 1.40Up
Eye39 54 of 4 0.89None
Thoracicoabdominal ganglion25 14 of 4 0.60Down
Salivary gland15 60 of 4 0.34Down
Crop502 144 of 411.30Up
Midgut21 14 of 4 0.50Down
Tubule8 11 of 4 0.20Down
Hindgut186 64 of 4 4.20Up
Heart281 304 of 4 6.31Up
Fat body16 63 of 4 0.37Down
Ovary8 00 of 4 0.20Down
Testis18 14 of 4 0.40Down
Male accessory glands69 24 of 4 1.60Up
Virgin spermatheca17 02 of 4 0.39Down
Mated spermatheca25 24 of 4 0.57Down
Adult carcass117 104 of 4 2.60Up
Larval CNS9 13 of 4 0.22Down
Larval Salivary gland9 10 of 4 0.22Down
Larval midgut18 10 of 4 0.41Down
Larval tubule6 10 of 4 0.10Down
Larval hindgut123 84 of 4 2.77Up
Larval fat body3 10 of 4 0.10Down
Larval trachea35 124 of 4 0.80None
Larval carcass463 424 of 410.39Up
S2 cells (growing)1 00 of 4 0.03Down
Whole fly44 54 of 4



():

Annotation Number : CG32458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052458
Gbrowse : chr3L:23024122-23027541 (+) // 100.0 //
Probeset : 1635083_at
Accessions : protein= NP_730772;, nucleotide= NM_168983;
FlyMine data for FBgn0052458.
VDRC has 8 RNAi stocks for FBgn0052458 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 11 of 4 3.50None
Head5 00 of 4 2.40Up
Eye8 04 of 4 4.13Up
Thoracicoabdominal ganglion3 20 of 4 1.80None
Salivary gland4 10 of 4 1.86None
Crop1 00 of 4 0.70None
Midgut0 00 of 4 0.30Down
Tubule1 00 of 4 0.90None
Hindgut2 00 of 4 1.20None
Heart2 10 of 4 1.21None
Fat body2 10 of 4 1.07None
Ovary1 00 of 4 0.50None
Testis9 11 of 4 4.20Up
Male accessory glands1 00 of 4 0.90None
Virgin spermatheca2 10 of 4 1.14None
Mated spermatheca1 00 of 4 0.68None
Adult carcass7 30 of 4 3.60None
Larval CNS7 12 of 4 3.25Up
Larval Salivary gland2 10 of 4 0.93None
Larval midgut0 00 of 4 0.36None
Larval tubule1 00 of 4 0.50None
Larval hindgut3 10 of 4 1.72None
Larval fat body4 10 of 4 2.00None
Larval trachea8 13 of 4 3.72Up
Larval carcass2 00 of 4 0.98None
S2 cells (growing)0 00 of 4 0.17Down
Whole fly2 00 of 4



():

Annotation Number : HDC11607
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0084015
Gbrowse : chr3L:23018665-23019960 (+) // 100.0 //
Probeset : 1628313_at
Accessions : protein= NP_001036622;, nucleotide= NM_001043157;
FlyMine data for FBgn0084015.
VDRC has 8 RNAi stocks for FBgn0084015 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 1.80None
Head6 11 of 4 2.10None
Eye7 12 of 4 2.26None
Thoracicoabdominal ganglion2 10 of 4 0.80None
Salivary gland12 61 of 4 3.75None
Crop10 21 of 4 3.30None
Midgut3 10 of 4 1.00None
Tubule1 00 of 4 0.60Down
Hindgut4 10 of 4 1.30None
Heart0 00 of 4 0.21None
Fat body2 10 of 4 0.67None
Ovary1 00 of 4 0.50None
Testis14 24 of 4 4.50Up
Male accessory glands7 20 of 4 2.30None
Virgin spermatheca3 10 of 4 1.07None
Mated spermatheca3 10 of 4 1.02None
Adult carcass8 50 of 4 2.60None
Larval CNS4 21 of 4 1.55None
Larval Salivary gland6 10 of 4 2.00None
Larval midgut1 00 of 4 0.30None
Larval tubule4 20 of 4 1.40None
Larval hindgut2 00 of 4 0.76None
Larval fat body5 10 of 4 1.70None
Larval trachea5 20 of 4 1.80None
Larval carcass3 10 of 4 0.98None
S2 cells (growing)4 11 of 4 1.47None
Whole fly3 10 of 4

Looking for FBgn0262509. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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