FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0262509 through 18771 annotations produced 3 hits

():

Annotation Number : CG32458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052458
Gbrowse : chr3L:23024122-23027541 (+) // 100.0 //
Probeset : 1635083_at
Accessions : protein= NP_730772;, nucleotide= NM_168983;
FlyMine data for FBgn0052458.
VDRC has 8 RNAi stocks for FBgn0052458 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	1 of 4	3.50	None
Head	5 ± 0	0 of 4	2.40	Up
Eye	8 ± 0	4 of 4	4.13	Up
Thoracicoabdominal ganglion	3 ± 2	0 of 4	1.80	None
Salivary gland	4 ± 1	0 of 4	1.86	None
Crop	1 ± 0	0 of 4	0.70	None
Midgut	0 ± 0	0 of 4	0.30	Down
Tubule	1 ± 0	0 of 4	0.90	None
Hindgut	2 ± 0	0 of 4	1.20	None
Heart	2 ± 1	0 of 4	1.21	None
Fat body	2 ± 1	0 of 4	1.07	None
Ovary	1 ± 0	0 of 4	0.50	None
Testis	9 ± 1	1 of 4	4.20	Up
Male accessory glands	1 ± 0	0 of 4	0.90	None
Virgin spermatheca	2 ± 1	0 of 4	1.14	None
Mated spermatheca	1 ± 0	0 of 4	0.68	None
Adult carcass	7 ± 3	0 of 4	3.60	None
Larval CNS	7 ± 1	2 of 4	3.25	Up
Larval Salivary gland	2 ± 1	0 of 4	0.93	None
Larval midgut	0 ± 0	0 of 4	0.36	None
Larval tubule	1 ± 0	0 of 4	0.50	None
Larval hindgut	3 ± 1	0 of 4	1.72	None
Larval fat body	4 ± 1	0 of 4	2.00	None
Larval trachea	8 ± 1	3 of 4	3.72	Up
Larval carcass	2 ± 0	0 of 4	0.98	None
S2 cells (growing)	0 ± 0	0 of 4	0.17	Down
Whole fly	2 ± 0	0 of 4

():

Annotation Number : CG8779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005629
Gbrowse : chr3L:22991540-23023031 (+) // 99.27 //
Probeset : 1637057_at
Accessions : protein= NP_001036621; /// NP_524218;, nucleotide= NM_001043156; /// NM_079494;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0005629.
Homophila reports that CG8779 is a close match (5e-12) to human gene CAML1;HSAS1;L1CAM (NP_076493), a gene associated with Corpus callosum, partial agenesis of, 304100 (3);CRASH syndrome, 303350 (3);Hydrocephalus due to aqueductal stenosis, 307000 (3);Hydrocephalus with congenital idiopathic intestinal pseudoobstruction, 307000 (3);Hydrocephalus with Hirschsprung disease and cleft palate, 142623 (3);MASA syndrome, 303350 (3).
VDRC has 8 RNAi stocks for FBgn0005629 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	39 ± 3	4 of 4	0.90	None
Head	64 ± 5	4 of 4	1.40	Up
Eye	39 ± 5	4 of 4	0.89	None
Thoracicoabdominal ganglion	25 ± 1	4 of 4	0.60	Down
Salivary gland	15 ± 6	0 of 4	0.34	Down
Crop	502 ± 14	4 of 4	11.30	Up
Midgut	21 ± 1	4 of 4	0.50	Down
Tubule	8 ± 1	1 of 4	0.20	Down
Hindgut	186 ± 6	4 of 4	4.20	Up
Heart	281 ± 30	4 of 4	6.31	Up
Fat body	16 ± 6	3 of 4	0.37	Down
Ovary	8 ± 0	0 of 4	0.20	Down
Testis	18 ± 1	4 of 4	0.40	Down
Male accessory glands	69 ± 2	4 of 4	1.60	Up
Virgin spermatheca	17 ± 0	2 of 4	0.39	Down
Mated spermatheca	25 ± 2	4 of 4	0.57	Down
Adult carcass	117 ± 10	4 of 4	2.60	Up
Larval CNS	9 ± 1	3 of 4	0.22	Down
Larval Salivary gland	9 ± 1	0 of 4	0.22	Down
Larval midgut	18 ± 1	0 of 4	0.41	Down
Larval tubule	6 ± 1	0 of 4	0.10	Down
Larval hindgut	123 ± 8	4 of 4	2.77	Up
Larval fat body	3 ± 1	0 of 4	0.10	Down
Larval trachea	35 ± 12	4 of 4	0.80	None
Larval carcass	463 ± 42	4 of 4	10.39	Up
S2 cells (growing)	1 ± 0	0 of 4	0.03	Down
Whole fly	44 ± 5	4 of 4

():

Annotation Number : HDC11607
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0084015
Gbrowse : chr3L:23018665-23019960 (+) // 100.0 //
Probeset : 1628313_at
Accessions : protein= NP_001036622;, nucleotide= NM_001043157;
FlyMine data for FBgn0084015.
VDRC has 8 RNAi stocks for FBgn0084015 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	1 of 4	1.80	None
Head	6 ± 1	1 of 4	2.10	None
Eye	7 ± 1	2 of 4	2.26	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.80	None
Salivary gland	12 ± 6	1 of 4	3.75	None
Crop	10 ± 2	1 of 4	3.30	None
Midgut	3 ± 1	0 of 4	1.00	None
Tubule	1 ± 0	0 of 4	0.60	Down
Hindgut	4 ± 1	0 of 4	1.30	None
Heart	0 ± 0	0 of 4	0.21	None
Fat body	2 ± 1	0 of 4	0.67	None
Ovary	1 ± 0	0 of 4	0.50	None
Testis	14 ± 2	4 of 4	4.50	Up
Male accessory glands	7 ± 2	0 of 4	2.30	None
Virgin spermatheca	3 ± 1	0 of 4	1.07	None
Mated spermatheca	3 ± 1	0 of 4	1.02	None
Adult carcass	8 ± 5	0 of 4	2.60	None
Larval CNS	4 ± 2	1 of 4	1.55	None
Larval Salivary gland	6 ± 1	0 of 4	2.00	None
Larval midgut	1 ± 0	0 of 4	0.30	None
Larval tubule	4 ± 2	0 of 4	1.40	None
Larval hindgut	2 ± 0	0 of 4	0.76	None
Larval fat body	5 ± 1	0 of 4	1.70	None
Larval trachea	5 ± 2	0 of 4	1.80	None
Larval carcass	3 ± 1	0 of 4	0.98	None
S2 cells (growing)	4 ± 1	1 of 4	1.47	None
Whole fly	3 ± 1	0 of 4

Looking for FBgn0262509. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720