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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262511 through 18771 annotations produced 1 hits



():

Annotation Number : CG8048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020611
Gbrowse : chr2R:12212767-12224142 (-) // 100.0 //
Probeset : 1635352_s_at
Accessions : protein= NP_001137679; /// NP_477266; /// NP_599140; /// NP_725564; /// NP_725565;, nucleotide= NM_001144207; /// NM_057918; /// NM_134313; /// NM_166163; /// NM_166164;
Pathway : "0033180 // proton-transporting V-type ATPase
Interpro : V1 domain // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0
FlyMine data for FBgn0020611.
BDGP gene expression has embryonic in situ data for Vha44: 19 pix of staining in 12 body parts.
BioGrid reports that CG8048 interacts with CG8863 .
VDRC has 2 RNAi stocks for FBgn0020611 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1023 214 of 4 1.70Up
Head655 344 of 4 1.10None
Eye665 244 of 4 1.07None
Thoracicoabdominal ganglion1454 714 of 4 2.30Up
Salivary gland5309 1664 of 4 8.57Up
Crop692 134 of 4 1.10Up
Midgut1738 304 of 4 2.80Up
Tubule2131 874 of 4 3.40Up
Hindgut2902 894 of 4 4.70Up
Heart648 314 of 4 1.05None
Fat body262 404 of 4 0.42Down
Ovary527 94 of 4 0.90Down
Testis111 34 of 4 0.20Down
Male accessory glands443 104 of 4 0.70Down
Virgin spermatheca262 114 of 4 0.42Down
Mated spermatheca301 74 of 4 0.49Down
Adult carcass653 374 of 4 1.10None
Larval CNS617 764 of 4 1.00None
Larval Salivary gland1474 334 of 4 2.38Up
Larval midgut1753 834 of 4 2.83Up
Larval tubule2524 1654 of 4 4.10Up
Larval hindgut3131 974 of 4 5.05Up
Larval fat body331 264 of 4 0.50Down
Larval trachea1030 734 of 4 1.66Up
Larval carcass783 334 of 4 1.27Up
S2 cells (growing)487 174 of 4 0.79Down
Whole fly619 164 of 4

Looking for FBgn0262511. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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