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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262512 through 18771 annotations produced 1 hits



():

Annotation Number : CG8210
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010426
Gbrowse : chr2R:11566927-11567585 (-) // 100.0 //
Probeset : 1639788_at
Accessions : protein= NP_476969;, nucleotide= NM_057621;
Pathway : "0033178 // proton-transporting two-sector ATPase complex
Interpro : catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase
FlyMine data for FBgn0010426.
BioGrid reports that CG8210 interacts with CG8292 .
VDRC has 1 RNAi stocks for FBgn0010426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1657 754 of 4 1.70Up
Head1313 444 of 4 1.30Up
Eye1981 544 of 4 2.00Up
Thoracicoabdominal ganglion2117 384 of 4 2.10Up
Salivary gland7440 2404 of 4 7.52Up
Crop1472 644 of 4 1.50Up
Midgut2857 1014 of 4 2.90Up
Tubule3210 584 of 4 3.20Up
Hindgut3850 1414 of 4 3.90Up
Heart1136 444 of 4 1.15None
Fat body389 674 of 4 0.39Down
Ovary1061 224 of 4 1.10None
Testis326 54 of 4 0.30Down
Male accessory glands1342 534 of 4 1.40Up
Virgin spermatheca901 174 of 4 0.91None
Mated spermatheca881 414 of 4 0.89None
Adult carcass848 444 of 4 0.90None
Larval CNS949 494 of 4 0.96None
Larval Salivary gland2941 1514 of 4 2.97Up
Larval midgut3341 774 of 4 3.38Up
Larval tubule3995 2064 of 4 4.00Up
Larval hindgut3612 634 of 4 3.65Up
Larval fat body1140 1064 of 4 1.20None
Larval trachea1684 1304 of 4 1.70Up
Larval carcass1559 644 of 4 1.58Up
S2 cells (growing)859 254 of 4 0.87None
Whole fly989 544 of 4

Looking for FBgn0262512. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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