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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262513 through 18771 annotations produced 1 hits



():

Annotation Number : CG9013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034169
Gbrowse : chr2R:12835215-12835683 (-) // 100.0 //
Probeset : 1641684_at
Accessions : protein= NP_611169;, nucleotide= NM_137325;
Pathway : "0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electro
Interpro : proton-transporting domain // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase
FlyMine data for FBgn0034169.
VDRC has 2 RNAi stocks for FBgn0034169 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 0.50None
Head13 ± 10 of 4 1.00None
Eye6 ± 30 of 4 0.52None
Thoracicoabdominal ganglion7 ± 10 of 4 0.50Down
Salivary gland13 ± 30 of 4 0.99None
Crop7 ± 10 of 4 0.60Down
Midgut7 ± 10 of 4 0.50Down
Tubule5 ± 10 of 4 0.40Down
Hindgut9 ± 11 of 4 0.70None
Heart6 ± 10 of 4 0.52Down
Fat body17 ± 31 of 4 1.34None
Ovary5 ± 00 of 4 0.40Down
Testis130 ± 144 of 4 9.80Up
Male accessory glands13 ± 30 of 4 1.00None
Virgin spermatheca9 ± 30 of 4 0.68None
Mated spermatheca14 ± 21 of 4 1.08None
Adult carcass24 ± 70 of 4 1.80None
Larval CNS2 ± 00 of 4 0.16Down
Larval Salivary gland9 ± 20 of 4 0.70None
Larval midgut6 ± 10 of 4 0.46Down
Larval tubule4 ± 10 of 4 0.40Down
Larval hindgut4 ± 10 of 4 0.36Down
Larval fat body31 ± 83 of 4 2.40None
Larval trachea5 ± 31 of 4 0.41Down
Larval carcass5 ± 10 of 4 0.39Down
S2 cells (growing)9 ± 10 of 4 0.69Down
Whole fly13 ± 14 of 4

Looking for FBgn0262513. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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