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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262516 through 18771 annotations produced 1 hits



():

Annotation Number : CG8743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036904
Gbrowse : chr3L:19738375-19742866 (-) // 100.0 // /// chr3L:19706959-19711450 (-) // 100.0 //
Probeset : 1623217_at
Accessions : protein= NP_649145;, nucleotide= NM_140888;
Pathway : 0005764 // lysosome // inferred from direct assay
FlyMine data for FBgn0036904.
Homophila reports that CG8743 is a close match (6e-102) to human gene MCOLN1;ML4 (NP_065394), a gene associated with Mucolipidosis IV, 252650 (3).
BioGrid reports that CG8743 interacts with CG9099 .
VDRC has 3 RNAi stocks for FBgn0036904 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 1.60None
Head3 11 of 4 1.20None
Eye4 00 of 4 1.59None
Thoracicoabdominal ganglion4 10 of 4 1.50None
Salivary gland13 10 of 4 4.74Up
Crop4 10 of 4 1.40None
Midgut3 00 of 4 1.10None
Tubule4 10 of 4 1.70None
Hindgut4 00 of 4 1.50None
Heart2 10 of 4 0.99None
Fat body2 20 of 4 0.98None
Ovary1 00 of 4 0.40None
Testis7 03 of 4 2.70Up
Male accessory glands6 20 of 4 2.10None
Virgin spermatheca4 10 of 4 1.48None
Mated spermatheca5 10 of 4 1.82None
Adult carcass5 10 of 4 1.90None
Larval CNS3 10 of 4 1.34None
Larval Salivary gland5 00 of 4 2.02None
Larval midgut3 10 of 4 1.14None
Larval tubule4 20 of 4 1.50None
Larval hindgut3 00 of 4 1.28None
Larval fat body3 10 of 4 1.10None
Larval trachea2 20 of 4 0.72None
Larval carcass4 00 of 4 1.41None
S2 cells (growing)1 00 of 4 0.68None
Whole fly2 10 of 4

Looking for FBgn0262516. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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