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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262518 through 18771 annotations produced 1 hits



():

Annotation Number : CG8287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015796
Gbrowse : chr3L:19860587-19864157 (-) // 100.0 //
Probeset : 1630083_at
Accessions : protein= NP_524172;, nucleotide= NM_079448;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electro
FlyMine data for FBgn0015796.
BDGP gene expression has embryonic in situ data for Rab8: 26 pix of staining in 12 body parts.
Homophila reports that CG8287 is a close match (2e-12) to human gene RAC2 (NP_002863), a gene associated with Neutrophil immunodeficiency syndrome, 608203 (3).
VDRC has 1 RNAi stocks for FBgn0015796 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain255 ± 74 of 4 1.50Up
Head210 ± 134 of 4 1.30Up
Eye165 ± 14 of 4 0.99None
Thoracicoabdominal ganglion226 ± 54 of 4 1.40Up
Salivary gland447 ± 54 of 4 2.67Up
Crop301 ± 84 of 4 1.80Up
Midgut177 ± 04 of 4 1.10None
Tubule164 ± 44 of 4 1.00None
Hindgut246 ± 44 of 4 1.50Up
Heart154 ± 84 of 4 0.92None
Fat body192 ± 134 of 4 1.15None
Ovary170 ± 44 of 4 1.00None
Testis55 ± 24 of 4 0.30Down
Male accessory glands400 ± 194 of 4 2.40Up
Virgin spermatheca164 ± 114 of 4 0.98None
Mated spermatheca183 ± 104 of 4 1.10None
Adult carcass337 ± 134 of 4 2.00Up
Larval CNS406 ± 324 of 4 2.43Up
Larval Salivary gland488 ± 94 of 4 2.91Up
Larval midgut218 ± 44 of 4 1.30Up
Larval tubule264 ± 34 of 4 1.60Up
Larval hindgut274 ± 44 of 4 1.64Up
Larval fat body178 ± 144 of 4 1.10None
Larval trachea221 ± 154 of 4 1.32Up
Larval carcass238 ± 134 of 4 1.42Up
S2 cells (growing)514 ± 84 of 4 3.07Up
Whole fly167 ± 74 of 4

Looking for FBgn0262518. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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