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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262519 through 18771 annotations produced 1 hits



():

Annotation Number : CG8103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013591
Gbrowse : chr3L:19875144-19903309 (-) // 100.0 //
Probeset : 1640441_at
Accessions : protein= NP_001014591; /// NP_001163476; /// NP_649154;, nucleotide= NM_001014591; /// NM_001170005; /// NM_140897;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotatio
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0013591.
Homophila reports that CG8103 is a close match (1e-13) to human gene AIRE;APECED (NP_000374), a gene associated with Autoimmune polyglandular disease, type I, 240300 (3).
BioGrid reports that CG8103 interacts with CG8173 CG6502 CG3340 CG3340 CG1856 CG7471 .
VDRC has 2 RNAi stocks for FBgn0013591 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain360 ± 34 of 4 1.20None
Head190 ± 64 of 4 0.60Down
Eye152 ± 24 of 4 0.51Down
Thoracicoabdominal ganglion346 ± 154 of 4 1.20None
Salivary gland326 ± 324 of 4 1.08None
Crop188 ± 84 of 4 0.60Down
Midgut168 ± 24 of 4 0.60Down
Tubule167 ± 44 of 4 0.60Down
Hindgut204 ± 64 of 4 0.70Down
Heart153 ± 54 of 4 0.51Down
Fat body165 ± 284 of 4 0.55Down
Ovary581 ± 74 of 4 1.90Up
Testis118 ± 54 of 4 0.40Down
Male accessory glands262 ± 84 of 4 0.90None
Virgin spermatheca206 ± 154 of 4 0.69Down
Mated spermatheca206 ± 64 of 4 0.69Down
Adult carcass181 ± 64 of 4 0.60Down
Larval CNS742 ± 244 of 4 2.47Up
Larval Salivary gland421 ± 84 of 4 1.40Up
Larval midgut199 ± 54 of 4 0.66Down
Larval tubule268 ± 34 of 4 0.90None
Larval hindgut240 ± 64 of 4 0.80None
Larval fat body162 ± 104 of 4 0.50Down
Larval trachea335 ± 314 of 4 1.11None
Larval carcass295 ± 144 of 4 0.98None
S2 cells (growing)361 ± 84 of 4 1.20None
Whole fly300 ± 244 of 4

Looking for FBgn0262519. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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