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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262524 through 18771 annotations produced 1 hits



():

Annotation Number : CG14121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086699
Gbrowse : chr3L:12517540-12518185 (+) // 100.0 //
Probeset : 1628830_at
Accessions : protein= NP_648587;, nucleotide= NM_140330;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0086699.
BioGrid reports that CG14121 interacts with CG31241 CG7281 CG17870 .
VDRC has 2 RNAi stocks for FBgn0086699 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 24 of 4 0.80None
Head14 ± 11 of 4 0.50Down
Eye12 ± 01 of 4 0.47Down
Thoracicoabdominal ganglion35 ± 14 of 4 1.40Up
Salivary gland5 ± 10 of 4 0.21Down
Crop24 ± 23 of 4 0.90None
Midgut33 ± 32 of 4 1.30None
Tubule35 ± 33 of 4 1.40Up
Hindgut23 ± 01 of 4 0.90None
Heart48 ± 34 of 4 1.86Up
Fat body30 ± 54 of 4 1.18None
Ovary31 ± 24 of 4 1.20None
Testis48 ± 44 of 4 1.90Up
Male accessory glands16 ± 30 of 4 0.70None
Virgin spermatheca25 ± 14 of 4 0.99None
Mated spermatheca21 ± 23 of 4 0.83None
Adult carcass34 ± 22 of 4 1.30None
Larval CNS63 ± 94 of 4 2.43Up
Larval Salivary gland20 ± 30 of 4 0.79None
Larval midgut45 ± 24 of 4 1.74Up
Larval tubule59 ± 34 of 4 2.30Up
Larval hindgut21 ± 13 of 4 0.84None
Larval fat body70 ± 44 of 4 2.70Up
Larval trachea45 ± 54 of 4 1.74Up
Larval carcass30 ± 24 of 4 1.16None
S2 cells (growing)69 ± 24 of 4 2.67Up
Whole fly26 ± 24 of 4

Looking for FBgn0262524. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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