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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262527 through 18771 annotations produced 1 hits



():

Annotation Number : CG4699
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038364
Gbrowse : chr3R:11619517-11627659 (+) // 99.91 //
Probeset : 1632472_s_at
Accessions : protein= NP_001163621; /// NP_001163622; /// NP_001163623; /// NP_001163624; /// NP_650492; /// NP_732069; /// NP_732070;, nucleotide= NM_001170150; /// NM_001170151; /// NM_001170152; /// NM_001170153; /// NM_142235; /// NM_169672; /// NM_169673;
Interpro : 0016874 // ligase activity // inferred from electronic annotation
FlyMine data for FBgn0038364.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain504 214 of 4 4.00Up
Head154 144 of 4 1.20None
Eye261 134 of 4 2.07Up
Thoracicoabdominal ganglion348 234 of 4 2.80Up
Salivary gland236 44 of 4 1.86Up
Crop187 84 of 4 1.50Up
Midgut112 34 of 4 0.90Down
Tubule120 44 of 4 1.00None
Hindgut157 74 of 4 1.20Up
Heart151 64 of 4 1.19Up
Fat body144 204 of 4 1.14None
Ovary269 44 of 4 2.10Up
Testis22 24 of 4 0.20Down
Male accessory glands191 84 of 4 1.50Up
Virgin spermatheca179 74 of 4 1.42Up
Mated spermatheca181 104 of 4 1.43Up
Adult carcass146 54 of 4 1.20Up
Larval CNS438 174 of 4 3.46Up
Larval Salivary gland152 124 of 4 1.20None
Larval midgut133 54 of 4 1.06None
Larval tubule191 44 of 4 1.50Up
Larval hindgut157 34 of 4 1.25Up
Larval fat body111 74 of 4 0.90None
Larval trachea260 104 of 4 2.05Up
Larval carcass127 64 of 4 1.01None
S2 cells (growing)241 114 of 4 1.90Up
Whole fly126 24 of 4

Looking for FBgn0262527. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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