Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262562 through 18771 annotations produced 2 hits



(CG43102):

Annotation Number : CG7397
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038543
Gbrowse : chr3R:13595815-13600009 (-) // 100.0 //
Probeset : 1628396_at
Accessions : protein= NP_650653;, nucleotide= NM_142396;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation
FlyMine data for FBgn0038543.
Homophila reports that CG7397 is a close match (2e-12) to human gene ARHGEF9;KIAA0424;PEM2 (NP_056000), a gene associated with Hyperekplexia and epilepsy, 300607 (3).
VDRC has 5 RNAi stocks for FBgn0038543 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 13 of 4 3.20Up
Head2 00 of 4 0.40None
Eye2 10 of 4 0.59None
Thoracicoabdominal ganglion3 10 of 4 0.70None
Salivary gland10 40 of 4 2.33None
Crop10 11 of 4 2.40Up
Midgut2 10 of 4 0.60None
Tubule2 00 of 4 0.50Down
Hindgut4 10 of 4 0.90None
Heart3 20 of 4 0.86None
Fat body0 00 of 4 0.19None
Ovary2 00 of 4 0.50None
Testis1 00 of 4 0.40None
Male accessory glands2 10 of 4 0.70None
Virgin spermatheca1 00 of 4 0.35None
Mated spermatheca1 00 of 4 0.22None
Adult carcass3 10 of 4 0.80None
Larval CNS1 10 of 4 0.36None
Larval Salivary gland1 00 of 4 0.32None
Larval midgut2 10 of 4 0.60None
Larval tubule6 10 of 4 1.40None
Larval hindgut1 00 of 4 0.42None
Larval fat body1 00 of 4 0.40None
Larval trachea2 10 of 4 0.67None
Larval carcass3 00 of 4 0.72None
S2 cells (growing)1 00 of 4 0.25None
Whole fly4 11 of 4



(CG43102):

Annotation Number : CG14318
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038544
Gbrowse : chr3R:13602967-13609720 (-) // 100.0 //
Probeset : 1641457_at
Accessions : protein= NP_650654;, nucleotide= NM_142397;
FlyMine data for FBgn0038544.
VDRC has 5 RNAi stocks for FBgn0038544 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 20 of 4 1.50None
Head5 20 of 4 1.80None
Eye8 31 of 4 2.98None
Thoracicoabdominal ganglion7 10 of 4 2.50None
Salivary gland16 40 of 4 5.65None
Crop8 10 of 4 2.90None
Midgut4 10 of 4 1.40None
Tubule9 10 of 4 3.20Up
Hindgut7 10 of 4 2.50None
Heart6 10 of 4 2.19None
Fat body6 30 of 4 2.43None
Ovary4 10 of 4 1.40None
Testis6 12 of 4 2.40Up
Male accessory glands13 31 of 4 4.60None
Virgin spermatheca8 20 of 4 2.90None
Mated spermatheca9 30 of 4 3.46None
Adult carcass6 20 of 4 2.30None
Larval CNS3 20 of 4 1.38None
Larval Salivary gland6 10 of 4 2.35None
Larval midgut6 10 of 4 2.14None
Larval tubule7 30 of 4 2.50None
Larval hindgut7 20 of 4 2.57None
Larval fat body17 12 of 4 6.00Up
Larval trachea2 10 of 4 0.79None
Larval carcass11 20 of 4 4.11Up
S2 cells (growing)9 10 of 4 3.26Up
Whole fly2 10 of 4

Looking for FBgn0262562. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime