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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262579 through 18771 annotations produced 1 hits



Ect4 (Ect4):

Annotation Number : CG13681
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035832
Gbrowse : chr3L:8064899-8065412 (+) // 100.0 //
Probeset : 1640039_at
Accessions : protein= NP_648170;, nucleotide= NM_139913;
FlyMine data for FBgn0035832.
VDRC has 9 RNAi stocks for FBgn0035832 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 04 of 4 0.80None
Head14 ± 13 of 4 1.30None
Eye7 ± 00 of 4 0.66None
Thoracicoabdominal ganglion9 ± 31 of 4 0.90None
Salivary gland10 ± 30 of 4 0.90None
Crop83 ± 34 of 4 7.30Up
Midgut9 ± 11 of 4 0.90None
Tubule10 ± 01 of 4 0.90Down
Hindgut13 ± 14 of 4 1.20None
Heart11 ± 14 of 4 1.02None
Fat body11 ± 33 of 4 0.96None
Ovary7 ± 13 of 4 0.70None
Testis6 ± 11 of 4 0.60None
Male accessory glands10 ± 13 of 4 0.90None
Virgin spermatheca9 ± 23 of 4 0.80None
Mated spermatheca8 ± 11 of 4 0.74None
Adult carcass26 ± 34 of 4 2.30Up
Larval CNS5 ± 31 of 4 0.48None
Larval Salivary gland6 ± 20 of 4 0.58None
Larval midgut8 ± 00 of 4 0.73None
Larval tubule30 ± 24 of 4 2.70Up
Larval hindgut8 ± 12 of 4 0.72None
Larval fat body28 ± 44 of 4 2.50Up
Larval trachea6 ± 21 of 4 0.58None
Larval carcass6 ± 10 of 4 0.54None
S2 cells (growing)25 ± 14 of 4 2.23Up
Whole fly11 ± 34 of 4

Looking for FBgn0262579. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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