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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262582 through 18771 annotations produced 1 hits



fettucine (cic):

Annotation Number : CG5060
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038780
Gbrowse : chr3R:16078504-16116840 (+) // 100.0 //
Probeset : 1625451_at
Accessions : protein= NP_001097842; /// NP_650873;, nucleotide= NM_001104372; /// NM_142616;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0038780.
BDGP gene expression has embryonic in situ data for CG5060: 4 pix of staining in 1 body parts.
VDRC has 12 RNAi stocks for FBgn0038780 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.10None
Head5 ± 10 of 4 1.60None
Eye5 ± 10 of 4 1.72None
Thoracicoabdominal ganglion2 ± 00 of 4 0.80None
Salivary gland9 ± 20 of 4 2.64None
Crop6 ± 00 of 4 1.80None
Midgut5 ± 10 of 4 1.50None
Tubule2 ± 00 of 4 0.60Down
Hindgut4 ± 10 of 4 1.20None
Heart5 ± 10 of 4 1.50None
Fat body4 ± 40 of 4 1.18None
Ovary6 ± 10 of 4 1.80None
Testis3 ± 00 of 4 1.00None
Male accessory glands6 ± 10 of 4 1.90None
Virgin spermatheca2 ± 00 of 4 0.79None
Mated spermatheca5 ± 10 of 4 1.71None
Adult carcass8 ± 30 of 4 2.40None
Larval CNS3 ± 20 of 4 1.12None
Larval Salivary gland5 ± 20 of 4 1.54None
Larval midgut4 ± 10 of 4 1.36None
Larval tubule4 ± 20 of 4 1.20None
Larval hindgut6 ± 10 of 4 1.99None
Larval fat body7 ± 20 of 4 2.20None
Larval trachea3 ± 20 of 4 0.99None
Larval carcass7 ± 00 of 4 2.15None
S2 cells (growing)15 ± 03 of 4 4.66Up
Whole fly3 ± 10 of 4

Looking for FBgn0262582. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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