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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262593 through 18771 annotations produced 1 hits



Shaker cognate b (Shab):

Annotation Number : CG9965
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035381
Gbrowse : chr3L:2954762-2957533 (+) // 100.0 //
Probeset : 1633404_at
Accessions : protein= NP_647755;, nucleotide= NM_139498;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035381.
VDRC has 6 RNAi stocks for FBgn0035381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 34 of 4 9.50Up
Head3 ± 11 of 4 1.00None
Eye3 ± 11 of 4 0.97None
Thoracicoabdominal ganglion27 ± 74 of 4 7.60Up
Salivary gland7 ± 20 of 4 1.94None
Crop6 ± 11 of 4 1.80None
Midgut8 ± 11 of 4 2.40Up
Tubule4 ± 10 of 4 1.20None
Hindgut4 ± 01 of 4 1.20None
Heart2 ± 00 of 4 0.68None
Fat body0 ± 00 of 4 0.21None
Ovary2 ± 10 of 4 0.70None
Testis2 ± 10 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.50None
Virgin spermatheca4 ± 10 of 4 1.25None
Mated spermatheca3 ± 10 of 4 0.97None
Adult carcass9 ± 21 of 4 2.50None
Larval CNS7 ± 12 of 4 2.00Up
Larval Salivary gland6 ± 00 of 4 1.77None
Larval midgut6 ± 10 of 4 1.71None
Larval tubule5 ± 10 of 4 1.40None
Larval hindgut2 ± 00 of 4 0.62None
Larval fat body3 ± 10 of 4 1.00None
Larval trachea1 ± 10 of 4 0.47None
Larval carcass5 ± 00 of 4 1.46None
S2 cells (growing)2 ± 00 of 4 0.62None
Whole fly3 ± 10 of 4

Looking for FBgn0262593. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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