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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262594 through 18771 annotations produced 1 hits



CheA46a (CheA46a):

Annotation Number : Stencil:2R:4806020:4810022:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053800
Gbrowse : chr2R:5632892-5636894 (+) // 100.0 //
Probeset : 1630464_at
Accessions : protein= NP_001027399;, nucleotide= NM_001032228;
FlyMine data for FBgn0053800.
VDRC has 2 RNAi stocks for FBgn0053800 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30Down
Head5 12 of 4 0.80None
Eye3 10 of 4 0.43Down
Thoracicoabdominal ganglion5 11 of 4 0.70None
Salivary gland5 20 of 4 0.85None
Crop3 10 of 4 0.50Down
Midgut6 11 of 4 0.90None
Tubule5 00 of 4 0.80None
Hindgut4 11 of 4 0.70None
Heart0 00 of 4 0.10Down
Fat body4 20 of 4 0.70None
Ovary5 02 of 4 0.70None
Testis2 10 of 4 0.40Down
Male accessory glands7 51 of 4 1.10None
Virgin spermatheca5 12 of 4 0.82None
Mated spermatheca4 10 of 4 0.66None
Adult carcass20 23 of 4 2.90Up
Larval CNS3 21 of 4 0.52None
Larval Salivary gland5 10 of 4 0.81None
Larval midgut4 20 of 4 0.68None
Larval tubule5 00 of 4 0.80None
Larval hindgut3 11 of 4 0.45None
Larval fat body5 20 of 4 0.80None
Larval trachea2 20 of 4 0.30Down
Larval carcass5 20 of 4 0.73None
S2 cells (growing)4 00 of 4 0.60None
Whole fly7 02 of 4

Looking for FBgn0262594. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime