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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262598 through 18771 annotations produced 1 hits



mitoshell (mtsh):

Annotation Number : CG7795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032019
Gbrowse : chr2L:8316706-8319920 (-) // 100.0 //
Probeset : 1633211_a_at
Accessions : protein= NP_609208; /// NP_723373;, nucleotide= NM_135364; /// NM_164806;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032019.
BioGrid reports that CG7795 interacts with CG9506 .
VDRC has 2 RNAi stocks for FBgn0032019 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 04 of 4 0.50Down
Head7 ± 12 of 4 0.40Down
Eye8 ± 13 of 4 0.47Down
Thoracicoabdominal ganglion15 ± 24 of 4 0.80None
Salivary gland19 ± 41 of 4 1.05None
Crop8 ± 22 of 4 0.50Down
Midgut16 ± 24 of 4 0.80None
Tubule6 ± 10 of 4 0.40Down
Hindgut10 ± 03 of 4 0.60Down
Heart7 ± 02 of 4 0.40Down
Fat body13 ± 34 of 4 0.71Down
Ovary7 ± 14 of 4 0.40Down
Testis256 ± 144 of 413.50Up
Male accessory glands11 ± 22 of 4 0.60Down
Virgin spermatheca7 ± 12 of 4 0.42Down
Mated spermatheca7 ± 13 of 4 0.42Down
Adult carcass8 ± 20 of 4 0.40Down
Larval CNS9 ± 14 of 4 0.49Down
Larval Salivary gland14 ± 13 of 4 0.73Down
Larval midgut20 ± 14 of 4 1.06None
Larval tubule10 ± 23 of 4 0.50Down
Larval hindgut10 ± 13 of 4 0.54Down
Larval fat body43 ± 104 of 4 2.30None
Larval trachea6 ± 42 of 4 0.32Down
Larval carcass8 ± 14 of 4 0.46Down
S2 cells (growing)57 ± 24 of 4 3.03Up
Whole fly19 ± 04 of 4

Looking for FBgn0262598. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime