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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0262599 through 18771 annotations produced 2 hits



(CG43129):

Annotation Number : CG17086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032310
Gbrowse : chr2L:10852511-10854603 (+) // 100.0 //
Probeset : 1625409_at
Accessions : protein= NP_609464;, nucleotide= NM_135620;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032310.
BDGP gene expression has embryonic in situ data for CG17086: 7 pix of staining in 1 body parts.
BioGrid reports that CG17086 interacts with CG32486 CG5651 CG9638 CG31175 CG32705 CG3642 CG4184 CG5933 CG6619 CG6703 CG7605 CG7835 .
VDRC has 2 RNAi stocks for FBgn0032310 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 14 of 4 2.50Up
Head21 23 of 4 1.90Up
Eye5 11 of 4 0.49Down
Thoracicoabdominal ganglion27 24 of 4 2.40Up
Salivary gland10 30 of 4 0.89None
Crop27 14 of 4 2.40Up
Midgut5 00 of 4 0.50Down
Tubule8 10 of 4 0.70Down
Hindgut22 21 of 4 2.00Up
Heart70 34 of 4 6.17Up
Fat body9 30 of 4 0.80None
Ovary3 00 of 4 0.30Down
Testis2 10 of 4 0.20Down
Male accessory glands12 10 of 4 1.10None
Virgin spermatheca5 10 of 4 0.46Down
Mated spermatheca4 10 of 4 0.35Down
Adult carcass44 54 of 4 3.90Up
Larval CNS6 10 of 4 0.60Down
Larval Salivary gland8 20 of 4 0.78None
Larval midgut7 10 of 4 0.64None
Larval tubule10 12 of 4 0.90None
Larval hindgut11 10 of 4 0.98None
Larval fat body7 20 of 4 0.70None
Larval trachea4 21 of 4 0.42Down
Larval carcass45 74 of 4 4.00Up
S2 cells (growing)5 00 of 4 0.48Down
Whole fly11 12 of 4



(CG43129):

Annotation Number : CG17085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032309
Gbrowse : chr2L:10851331-10851898 (+) // 100.0 //
Probeset : 1628752_at
Accessions : protein= NP_609463;, nucleotide= NM_135619;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032309.
BioGrid reports that CG17085 interacts with CG17610 CG5025 CG5282 CG8301 CG8696 .
VDRC has 2 RNAi stocks for FBgn0032309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 13 of 4 1.10None
Head10 12 of 4 1.30None
Eye10 03 of 4 1.23None
Thoracicoabdominal ganglion8 11 of 4 1.00None
Salivary gland23 23 of 4 2.93Up
Crop12 22 of 4 1.50None
Midgut9 30 of 4 1.10None
Tubule10 01 of 4 1.30Up
Hindgut9 12 of 4 1.20None
Heart5 22 of 4 0.72None
Fat body15 34 of 4 1.93Up
Ovary5 12 of 4 0.60None
Testis6 03 of 4 0.80None
Male accessory glands5 10 of 4 0.60None
Virgin spermatheca17 14 of 4 2.08Up
Mated spermatheca13 32 of 4 1.62None
Adult carcass19 33 of 4 2.40Up
Larval CNS8 14 of 4 1.05None
Larval Salivary gland12 21 of 4 1.50None
Larval midgut9 10 of 4 1.15None
Larval tubule6 11 of 4 0.80None
Larval hindgut9 03 of 4 1.13None
Larval fat body10 20 of 4 1.30None
Larval trachea6 01 of 4 0.78None
Larval carcass13 23 of 4 1.66None
S2 cells (growing)9 21 of 4 1.13None
Whole fly8 12 of 4

Looking for FBgn0262599. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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