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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for GH01085 through 18771 annotations produced 1 hits



zeste-white 4 (egh):

Annotation Number : GH01085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001404
Gbrowse : chrX:2482596-2490218 (+) // 99.72 //
Probeset : 1631621_s_at
Accessions : protein= NP_525052; /// NP_726818;, nucleotide= NM_080313; /// NM_166946;
Pathway : post-mating // inferred from mutant phenotype /// 0046662 // regulation of oviposition // inferred from mutant phenotyp
Interpro : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
FlyMine data for FBgn0001404.
TRiP has 1 RNAi stocks for FBgn0001404 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001404 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain244 ± 54 of 4 3.00Up
Head77 ± 174 of 4 1.00None
Eye571 ± 144 of 4 7.08Up
Thoracicoabdominal ganglion225 ± 274 of 4 2.80Up
Salivary gland41 ± 84 of 4 0.51Down
Crop126 ± 44 of 4 1.60Up
Midgut252 ± 134 of 4 3.10Up
Tubule480 ± 474 of 4 6.00Up
Hindgut194 ± 124 of 4 2.40Up
Heart352 ± 204 of 4 4.37Up
Fat body45 ± 124 of 4 0.56Down
Ovary122 ± 34 of 4 1.50Up
Testis26 ± 34 of 4 0.30Down
Male accessory glands282 ± 184 of 4 3.50Up
Virgin spermatheca137 ± 84 of 4 1.70Up
Mated spermatheca192 ± 184 of 4 2.39Up
Adult carcass102 ± 294 of 4 1.30None
Larval CNS92 ± 174 of 4 1.15None
Larval Salivary gland38 ± 24 of 4 0.48Down
Larval midgut225 ± 314 of 4 2.80Up
Larval tubule944 ± 624 of 411.70Up
Larval hindgut213 ± 294 of 4 2.65Up
Larval fat body195 ± 134 of 4 2.40Up
Larval trachea286 ± 364 of 4 3.55Up
Larval carcass65 ± 34 of 4 0.81None
S2 cells (growing)226 ± 34 of 4 2.80Up
Whole fly80 ± 94 of 4

Looking for GH01085. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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