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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for GM02019 through 18771 annotations produced 1 hits



lilliputian (lilli):

Annotation Number : GM02019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041111
Gbrowse : chr2L:2885951-2945194 (+) // 99.8 //
Probeset : 1623171_s_at
Accessions : protein= NP_001137772; /// NP_001137773; /// NP_001137774; /// NP_001137775; /// NP_523464; /// NP_722863; /// NP_722864;, nucleotide= NM_001144300; /// NM_001144301; /// NM_001144302; /// NM_001144303; /// NM_078740; /// NM_164516; /// NM_164517;
Pathway : actomyosin contractile ring assembly // non-traceable author statement /// 0006350 // transcription // inferred from el
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0041111.
BDGP gene expression has embryonic in situ data for lilli: 6 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0041111 available for purchase.
VDRC has 3 RNAi stocks for FBgn0041111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 24 of 4 3.70Up
Head5 ± 20 of 4 0.70None
Eye23 ± 34 of 4 2.86Up
Thoracicoabdominal ganglion7 ± 11 of 4 0.90None
Salivary gland4 ± 30 of 4 0.59None
Crop9 ± 20 of 4 1.10None
Midgut9 ± 11 of 4 1.20None
Tubule5 ± 10 of 4 0.60Down
Hindgut21 ± 14 of 4 2.60Up
Heart46 ± 44 of 4 5.54Up
Fat body13 ± 61 of 4 1.62None
Ovary17 ± 14 of 4 2.10Up
Testis8 ± 23 of 4 1.00None
Male accessory glands9 ± 10 of 4 1.10None
Virgin spermatheca8 ± 11 of 4 1.04None
Mated spermatheca11 ± 12 of 4 1.31None
Adult carcass10 ± 40 of 4 1.30None
Larval CNS7 ± 53 of 4 0.93None
Larval Salivary gland9 ± 10 of 4 1.09None
Larval midgut5 ± 10 of 4 0.69None
Larval tubule7 ± 10 of 4 0.90None
Larval hindgut11 ± 01 of 4 1.32None
Larval fat body7 ± 10 of 4 0.90None
Larval trachea23 ± 84 of 4 2.87Up
Larval carcass10 ± 20 of 4 1.21None
S2 cells (growing)29 ± 14 of 4 3.52Up
Whole fly8 ± 10 of 4

Looking for GM02019. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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