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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC00336 through 18771 annotations produced 1 hits



(CG34174):

Annotation Number : HDC00336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085203
Gbrowse : chr2L:2214311-2215148 (+) // 100.0 //
Probeset : 1640652_at
Accessions : protein= NP_001097057;, nucleotide= NM_001103587;
FlyMine data for FBgn0085203.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 14 of 4 0.60Down
Head16 ± 14 of 4 0.40Down
Eye18 ± 14 of 4 0.41Down
Thoracicoabdominal ganglion23 ± 24 of 4 0.50Down
Salivary gland36 ± 23 of 4 0.82None
Crop51 ± 44 of 4 1.20None
Midgut19 ± 10 of 4 0.40Down
Tubule33 ± 34 of 4 0.80Down
Hindgut29 ± 24 of 4 0.70Down
Heart23 ± 24 of 4 0.54Down
Fat body24 ± 13 of 4 0.56Down
Ovary100 ± 24 of 4 2.30Up
Testis14 ± 03 of 4 0.30Down
Male accessory glands58 ± 54 of 4 1.30None
Virgin spermatheca32 ± 24 of 4 0.74None
Mated spermatheca34 ± 04 of 4 0.78None
Adult carcass23 ± 22 of 4 0.50Down
Larval CNS83 ± 94 of 4 1.88Up
Larval Salivary gland66 ± 34 of 4 1.50Up
Larval midgut9 ± 20 of 4 0.22Down
Larval tubule67 ± 04 of 4 1.50Up
Larval hindgut30 ± 04 of 4 0.68Down
Larval fat body20 ± 14 of 4 0.50Down
Larval trachea44 ± 64 of 4 1.00None
Larval carcass26 ± 24 of 4 0.59Down
S2 cells (growing)20 ± 24 of 4 0.47Down
Whole fly44 ± 34 of 4

Looking for HDC00336. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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