FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for HDC00470 through 18771 annotations produced 1 hits

Synaptotagmin1 (Syt1):

Annotation Number : HDC00470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004242
Gbrowse : chr2L:2799884-2800736 (-) // 100.0 //
Probeset : 1635102_at
Accessions : protein= NP_523460; /// NP_722838; /// NP_722839; /// NP_995619;, nucleotide= NM_078736; /// NM_164501; /// NM_164502; /// NM_205897;
Pathway : 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from sequence or s
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred fr
FlyMine data for FBgn0004242.
BDGP gene expression has embryonic in situ data for syt: 10 pix of staining in 4 body parts.
TRiP has 2 RNAi stocks for FBgn0004242 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004242 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	0.60	None
Head	6 ± 2	0 of 4	0.70	None
Eye	2 ± 1	0 of 4	0.29	Down
Thoracicoabdominal ganglion	8 ± 2	0 of 4	0.90	None
Salivary gland	13 ± 3	0 of 4	1.41	None
Crop	12 ± 1	0 of 4	1.30	None
Midgut	7 ± 1	0 of 4	0.80	None
Tubule	7 ± 1	0 of 4	0.70	Down
Hindgut	13 ± 3	0 of 4	1.40	None
Heart	5 ± 2	0 of 4	0.61	None
Fat body	10 ± 1	0 of 4	1.09	None
Ovary	15 ± 1	0 of 4	1.60	Up
Testis	2 ± 1	0 of 4	0.30	Down
Male accessory glands	15 ± 4	0 of 4	1.60	None
Virgin spermatheca	2 ± 0	0 of 4	0.31	Down
Mated spermatheca	6 ± 2	0 of 4	0.68	None
Adult carcass	12 ± 5	0 of 4	1.30	None
Larval CNS	5 ± 1	0 of 4	0.60	None
Larval Salivary gland	7 ± 2	0 of 4	0.74	None
Larval midgut	4 ± 2	0 of 4	0.47	None
Larval tubule	16 ± 3	0 of 4	1.70	None
Larval hindgut	13 ± 2	0 of 4	1.39	None
Larval fat body	10 ± 0	0 of 4	1.10	None
Larval trachea	8 ± 2	0 of 4	0.87	None
Larval carcass	18 ± 1	0 of 4	1.89	Up
S2 cells (growing)	13 ± 1	0 of 4	1.46	None
Whole fly	9 ± 1	0 of 4

Looking for HDC00470. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720