Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC01368 through 18771 annotations produced 1 hits



Sno-oncogene (Snoo):

Annotation Number : HDC01368
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085450
Gbrowse : chr2L:7957710-7958669 (-) // 100.0 //
Probeset : 1637449_at
Accessions : protein= NP_001097115; /// NP_001097116; /// NP_001097117; /// NP_001097118; /// NP_001097119;, nucleotide= NM_001103645; /// NM_001103646; /// NM_001103647; /// NM_001103648; /// NM_001103649;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0085450.
TRiP has 1 RNAi stocks for FBgn0085450 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085450 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 14 of 4 1.00None
Head9 21 of 4 1.00None
Eye4 00 of 4 0.43Down
Thoracicoabdominal ganglion9 23 of 4 0.90None
Salivary gland26 54 of 4 2.60None
Crop15 14 of 4 1.50None
Midgut15 14 of 4 1.50Up
Tubule9 03 of 4 0.90Down
Hindgut16 04 of 4 1.60Up
Heart8 03 of 4 0.85None
Fat body16 44 of 4 1.60None
Ovary7 14 of 4 0.70None
Testis10 14 of 4 1.00None
Male accessory glands22 34 of 4 2.20Up
Virgin spermatheca10 23 of 4 0.98None
Mated spermatheca14 34 of 4 1.44None
Adult carcass19 13 of 4 1.80Up
Larval CNS7 14 of 4 0.68Down
Larval Salivary gland13 22 of 4 1.32None
Larval midgut14 33 of 4 1.44None
Larval tubule11 03 of 4 1.10None
Larval hindgut11 04 of 4 1.09None
Larval fat body16 34 of 4 1.60None
Larval trachea9 33 of 4 0.92None
Larval carcass13 13 of 4 1.32None
S2 cells (growing)16 14 of 4 1.61Up
Whole fly10 04 of 4

Looking for HDC01368. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime