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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC02629 through 18771 annotations produced 2 hits



chaoptic-like (CG4168):

Annotation Number : HDC02629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028888
Gbrowse : chr2L:15161421-15162231 (-) // 100.0 //
Probeset : 1629110_x_at
Accessions : protein= NP_609740;, nucleotide= NM_135896;
Interpro : 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0028888.
TRiP has 1 RNAi stocks for FBgn0028888 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028888 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 33 of 4 0.60Down
Head81 ± 64 of 4 1.40Up
Eye24 ± 23 of 4 0.42Down
Thoracicoabdominal ganglion40 ± 41 of 4 0.70None
Salivary gland86 ± 51 of 4 1.51Up
Crop64 ± 23 of 4 1.10None
Midgut74 ± 30 of 4 1.30None
Tubule60 ± 24 of 4 1.10None
Hindgut98 ± 84 of 4 1.70Up
Heart35 ± 14 of 4 0.62Down
Fat body76 ± 84 of 4 1.34Up
Ovary23 ± 30 of 4 0.40Down
Testis35 ± 23 of 4 0.60Down
Male accessory glands38 ± 21 of 4 0.70Down
Virgin spermatheca72 ± 83 of 4 1.27None
Mated spermatheca70 ± 53 of 4 1.24None
Adult carcass96 ± 92 of 4 1.70Up
Larval CNS26 ± 30 of 4 0.47Down
Larval Salivary gland43 ± 70 of 4 0.76None
Larval midgut67 ± 50 of 4 1.18None
Larval tubule67 ± 32 of 4 1.20None
Larval hindgut57 ± 43 of 4 1.00None
Larval fat body36 ± 32 of 4 0.60Down
Larval trachea66 ± 153 of 4 1.16None
Larval carcass89 ± 52 of 4 1.58Up
S2 cells (growing)53 ± 30 of 4 0.95None
Whole fly57 ± 64 of 4



chaoptic-like (CG4168):

Annotation Number : HDC02629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028888
Gbrowse : chr2L:15161421-15162231 (-) // 100.0 //
Probeset : 1623118_s_at
Accessions : protein= NP_609740;, nucleotide= NM_135896;
Interpro : 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0028888.
TRiP has 1 RNAi stocks for FBgn0028888 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028888 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 30 of 4 1.10None
Head56 ± 40 of 4 2.10Up
Eye11 ± 20 of 4 0.43Down
Thoracicoabdominal ganglion20 ± 30 of 4 0.80None
Salivary gland100 ± 100 of 4 3.82Up
Crop29 ± 10 of 4 1.10None
Midgut35 ± 20 of 4 1.40None
Tubule12 ± 10 of 4 0.50Down
Hindgut35 ± 20 of 4 1.30None
Heart4 ± 20 of 4 0.17Down
Fat body46 ± 110 of 4 1.75Up
Ovary9 ± 00 of 4 0.30Down
Testis4 ± 10 of 4 0.20Down
Male accessory glands28 ± 30 of 4 1.10None
Virgin spermatheca31 ± 70 of 4 1.19None
Mated spermatheca41 ± 50 of 4 1.56None
Adult carcass60 ± 180 of 4 2.30None
Larval CNS12 ± 30 of 4 0.46Down
Larval Salivary gland19 ± 40 of 4 0.72None
Larval midgut20 ± 00 of 4 0.79None
Larval tubule36 ± 10 of 4 1.40Up
Larval hindgut23 ± 40 of 4 0.88None
Larval fat body17 ± 40 of 4 0.70None
Larval trachea11 ± 130 of 4 0.43None
Larval carcass35 ± 50 of 4 1.34None
S2 cells (growing)20 ± 00 of 4 0.79None
Whole fly26 ± 30 of 4

Looking for HDC02629. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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