Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC02636 through 18771 annotations produced 1 hits



(CG33911):

Annotation Number : HDC02636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053911
Gbrowse : chr2L:15232211-15232799 (+) // 100.0 //
Probeset : 1636070_at
Accessions : protein= NP_001027275;, nucleotide= NM_001032104;
FlyMine data for FBgn0053911.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.70None
Head4 ± 10 of 4 1.20None
Eye4 ± 20 of 4 1.41None
Thoracicoabdominal ganglion3 ± 10 of 4 1.00None
Salivary gland6 ± 20 of 4 1.87None
Crop6 ± 30 of 4 1.80None
Midgut1 ± 00 of 4 0.40Down
Tubule3 ± 00 of 4 0.90None
Hindgut2 ± 00 of 4 0.70None
Heart2 ± 00 of 4 0.58None
Fat body8 ± 10 of 4 2.38Up
Ovary1 ± 00 of 4 0.40Down
Testis2 ± 00 of 4 0.70None
Male accessory glands4 ± 10 of 4 1.10None
Virgin spermatheca3 ± 00 of 4 1.06None
Mated spermatheca2 ± 00 of 4 0.74None
Adult carcass4 ± 10 of 4 1.10None
Larval CNS4 ± 20 of 4 1.38None
Larval Salivary gland4 ± 10 of 4 1.26None
Larval midgut5 ± 10 of 4 1.52None
Larval tubule1 ± 00 of 4 0.30Down
Larval hindgut5 ± 10 of 4 1.65None
Larval fat body3 ± 00 of 4 1.00None
Larval trachea4 ± 20 of 4 1.30None
Larval carcass2 ± 00 of 4 0.64None
S2 cells (growing)3 ± 10 of 4 0.92None
Whole fly3 ± 00 of 4

Looking for HDC02636. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime