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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC03055 through 18771 annotations produced 1 hits



(CG34171):

Annotation Number : HDC03055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085200
Gbrowse : chr2L:18378904-18379620 (+) // 96.61 //
Probeset : 1625630_at
Accessions : protein= NP_001097175;, nucleotide= NM_001103705;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0085200.
VDRC has 1 RNAi stocks for FBgn0085200 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head1 ± 00 of 4 0.20Down
Eye4 ± 10 of 4 0.48Down
Thoracicoabdominal ganglion5 ± 11 of 4 0.60None
Salivary gland4 ± 10 of 4 0.42Down
Crop7 ± 12 of 4 0.70None
Midgut6 ± 10 of 4 0.60None
Tubule4 ± 00 of 4 0.40Down
Hindgut4 ± 11 of 4 0.50Down
Heart4 ± 10 of 4 0.42Down
Fat body4 ± 20 of 4 0.45Down
Ovary5 ± 10 of 4 0.50None
Testis58 ± 14 of 4 5.90Up
Male accessory glands230 ± 404 of 422.90Up
Virgin spermatheca2 ± 00 of 4 0.26Down
Mated spermatheca2 ± 00 of 4 0.28Down
Adult carcass3 ± 10 of 4 0.30Down
Larval CNS3 ± 11 of 4 0.33Down
Larval Salivary gland4 ± 10 of 4 0.42Down
Larval midgut4 ± 10 of 4 0.43Down
Larval tubule6 ± 11 of 4 0.60None
Larval hindgut4 ± 03 of 4 0.42Down
Larval fat body16 ± 43 of 4 1.60None
Larval trachea5 ± 21 of 4 0.56None
Larval carcass2 ± 00 of 4 0.21Down
S2 cells (growing)4 ± 10 of 4 0.40Down
Whole fly10 ± 13 of 4

Looking for HDC03055. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime