FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for HDC03535 through 18771 annotations produced 1 hits

(CG34136):

Annotation Number : HDC03535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083972
Gbrowse : chr2L:21097188-21098728 (+) // 100.0 //
Probeset : 1626759_at
Accessions : protein= NP_001036371;, nucleotide= NM_001042906;
FlyMine data for FBgn0083972.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	205 ± 13	4 of 4	7.50	Up
Head	147 ± 10	4 of 4	5.40	Up
Eye	71 ± 8	4 of 4	2.61	Up
Thoracicoabdominal ganglion	183 ± 4	4 of 4	6.70	Up
Salivary gland	7 ± 2	0 of 4	0.28	Down
Crop	6 ± 2	0 of 4	0.20	Down
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	10 ± 2	2 of 4	0.40	Down
Heart	251 ± 24	4 of 4	9.15	Up
Fat body	454 ± 81	4 of 4	16.57	Up
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	12 ± 1	0 of 4	0.40	Down
Male accessory glands	6 ± 3	0 of 4	0.20	Down
Virgin spermatheca	1015 ± 34	4 of 4	36.99	Up
Mated spermatheca	692 ± 63	4 of 4	25.22	Up
Adult carcass	178 ± 22	4 of 4	6.50	Up
Larval CNS	9 ± 1	3 of 4	0.33	Down
Larval Salivary gland	15 ± 2	0 of 4	0.56	Down
Larval midgut	2 ± 2	0 of 4	0.11	Down
Larval tubule	3 ± 0	0 of 4	0.10	Down
Larval hindgut	21 ± 5	4 of 4	0.77	None
Larval fat body	706 ± 72	4 of 4	25.70	Up
Larval trachea	24 ± 24	3 of 4	0.89	None
Larval carcass	13 ± 3	2 of 4	0.49	Down
S2 cells (growing)	5 ± 1	0 of 4	0.22	Down
Whole fly	27 ± 3	4 of 4

Looking for HDC03535. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720