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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for HDC04985 through 18771 annotations produced 1 hits


Down syndrome cell adhesion molecule (Dscam):

Annotation Number : HDC04985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033159
Gbrowse : chr2R:3244687-3245791 (-) // 94.37 //
Probeset : 1633601_at
Accessions : protein= NP_001036476; /// NP_001036477; /// NP_001036478; /// NP_001036479; /// NP_001036480; /// NP_001036481; /// NP_001036482; /// NP_001036483; /// NP_001036484; /// NP_001036485; /// NP_001036486; /// NP_001036487; /// NP_001036488; /// NP_001036489; /// NP_001036490; /// NP_001036491; /// NP_001036492; /// NP_001036493; /// NP_001036494; /// NP_001036495; /// NP_001036496; /// NP_001036497; /// NP_001036498; /// NP_001036499; /// NP_001036500; /// NP_001036501; /// NP_001036502; /// NP_001036503; /// NP_001036504; /// NP_001036505; /// NP_001036506; /// NP_001036507; /// NP_001036508; /// NP_001036509; /// NP_001036510; /// NP_001036511; /// NP_001036512; /// NP_001036513; /// NP_001036514; /// NP_001036515; /// NP_001036516; /// NP_001036517; /// NP_001036518; /// NP_001036519; /// NP_001036520; /// NP_001036521; /// NP_001036522; /// NP_001036523; /// NP_001036524; /// NP_001036525; /// NP_001036526; /// NP_001036527; /// NP_001036528; /// NP_001036529; /// NP_001036530; /// NP_523649; /// NP_724542; /// NP_724543; /// NP_995769;, nucleotide= NM_001043011; /// NM_001043012; /// NM_001043013; /// NM_001043014; /// NM_001043015; /// NM_001043016; /// NM_001043017; /// NM_001043018; /// NM_001043019; /// NM_001043020; /// NM_001043021; /// NM_001043022; /// NM_001043023; /// NM_001043024; /// NM_001043025; /// NM_001043026; /// NM_001043027; /// NM_001043028; /// NM_001043029; /// NM_001043030; /// NM_001043031; /// NM_001043032; /// NM_001043033; /// NM_001043034; /// NM_001043035; /// NM_001043036; /// NM_001043037; /// NM_001043038; /// NM_001043039; /// NM_001043040; /// NM_001043041; /// NM_001043042; /// NM_001043043; /// NM_001043044; /// NM_001043045; /// NM_001043046; /// NM_001043047; /// NM_001043048; /// NM_001043049; /// NM_001043050; /// NM_001043051; /// NM_001043052; /// NM_001043053; /// NM_001043054; /// NM_001043055; /// NM_001043056; /// NM_001043057; /// NM_001043058; /// NM_001043059; /// NM_001043060; /// NM_001043061; /// NM_001043062; /// NM_001043063; /// NM_001043064; /// NM_001043065; /// NM_078925; /// NM_165513; /// NM_165514; /// NM_206047;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0030424 // axon // inferre
Interpro : 0005515 // protein binding // inferred from direct assay /// 0008046 // axon guidance receptor activity // inferred from
FlyMine data for FBgn0033159.
BDGP gene expression has embryonic in situ data for Dscam: 13 pix of staining in 6 body parts.
TRiP has 2 RNAi stocks for FBgn0033159 available for purchase.
VDRC has 7 RNAi stocks for FBgn0033159 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head6 ± 00 of 4 1.00None
Eye1 ± 00 of 4 0.19Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.30Down
Salivary gland3 ± 00 of 4 0.56None
Crop6 ± 20 of 4 1.00None
Midgut11 ± 20 of 4 1.70None
Tubule5 ± 00 of 4 0.90None
Hindgut8 ± 20 of 4 1.20None
Heart2 ± 00 of 4 0.44None
Fat body17 ± 30 of 4 2.59Up
Ovary1 ± 00 of 4 0.20Down
Testis4 ± 00 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.20Down
Virgin spermatheca5 ± 20 of 4 0.79None
Mated spermatheca10 ± 00 of 4 1.61Up
Adult carcass10 ± 10 of 4 1.50None
Larval CNS1 ± 10 of 4 0.26Down
Larval Salivary gland6 ± 20 of 4 1.03None
Larval midgut11 ± 11 of 4 1.76Up
Larval tubule5 ± 00 of 4 0.80None
Larval hindgut4 ± 00 of 4 0.63None
Larval fat body3 ± 10 of 4 0.50None
Larval trachea2 ± 10 of 4 0.31Down
Larval carcass4 ± 00 of 4 0.74None
S2 cells (growing)4 ± 10 of 4 0.65None
Whole fly6 ± 10 of 4

Looking for HDC04985. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime