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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC05737 through 18771 annotations produced 1 hits



(CG34225):

Annotation Number : HDC05737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085254
Gbrowse : chr2R:7132948-7133264 (+) // 100.0 //
Probeset : 1628119_at
Accessions : protein= NP_001097267;, nucleotide= NM_001103797;
FlyMine data for FBgn0085254.
VDRC has 1 RNAi stocks for FBgn0085254 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head3 ± 10 of 4 1.20None
Eye2 ± 10 of 4 1.13None
Thoracicoabdominal ganglion2 ± 00 of 4 0.80None
Salivary gland12 ± 30 of 4 4.79Up
Crop3 ± 00 of 4 1.30None
Midgut5 ± 20 of 4 2.00None
Tubule3 ± 00 of 4 1.40None
Hindgut4 ± 20 of 4 1.60None
Heart4 ± 10 of 4 1.70None
Fat body2 ± 20 of 4 0.90None
Ovary0 ± 00 of 4 0.20None
Testis2 ± 00 of 4 1.00None
Male accessory glands2 ± 00 of 4 0.80None
Virgin spermatheca1 ± 00 of 4 0.75None
Mated spermatheca2 ± 10 of 4 0.92None
Adult carcass6 ± 20 of 4 2.50None
Larval CNS1 ± 00 of 4 0.43None
Larval Salivary gland4 ± 10 of 4 1.62None
Larval midgut4 ± 10 of 4 1.59None
Larval tubule2 ± 10 of 4 1.10None
Larval hindgut3 ± 00 of 4 1.29None
Larval fat body3 ± 10 of 4 1.50None
Larval trachea2 ± 10 of 4 0.93None
Larval carcass2 ± 00 of 4 0.93None
S2 cells (growing)0 ± 00 of 4 0.35None
Whole fly2 ± 10 of 4

Looking for HDC05737. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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