Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC06312 through 18771 annotations produced 1 hits



Mastermind (mam):

Annotation Number : HDC06312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002643
Gbrowse : chr2R:9919037-9919305 (+) // 100.0 //
Probeset : 1624960_at
Accessions : protein= NP_525115; /// NP_725354; /// NP_995831;, nucleotide= NM_080376; /// NM_166030; /// NM_206109;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003713 // transcription coactivator activity // inferred from electronic annotation
FlyMine data for FBgn0002643.
TRiP has 1 RNAi stocks for FBgn0002643 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 24 of 4 1.30None
Head12 21 of 4 0.90None
Eye8 10 of 4 0.61Down
Thoracicoabdominal ganglion15 11 of 4 1.20None
Salivary gland42 30 of 4 3.15Up
Crop17 30 of 4 1.30None
Midgut20 32 of 4 1.50None
Tubule10 00 of 4 0.70Down
Hindgut16 11 of 4 1.30None
Heart10 04 of 4 0.82None
Fat body26 73 of 4 2.01Up
Ovary11 00 of 4 0.90None
Testis5 10 of 4 0.40Down
Male accessory glands24 30 of 4 1.80Up
Virgin spermatheca24 21 of 4 1.82Up
Mated spermatheca30 11 of 4 2.26Up
Adult carcass14 20 of 4 1.10None
Larval CNS15 22 of 4 1.15None
Larval Salivary gland18 20 of 4 1.39None
Larval midgut14 00 of 4 1.06None
Larval tubule15 11 of 4 1.20None
Larval hindgut16 22 of 4 1.25None
Larval fat body20 20 of 4 1.60Up
Larval trachea13 14 of 4 1.03None
Larval carcass10 10 of 4 0.76None
S2 cells (growing)17 22 of 4 1.29None
Whole fly13 10 of 4

Looking for HDC06312. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime