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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC06452 through 18771 annotations produced 1 hits



collier (kn):

Annotation Number : HDC06452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001319
Gbrowse : chr2R:10692154-10694566 (-) // 100.0 //
Probeset : 1638559_at
Accessions : protein= NP_001097317; /// NP_524813; /// NP_610990; /// NP_725419;, nucleotide= NM_001103847; /// NM_080074; /// NM_137146; /// NM_137146; /// NM_166070;
Pathway : DNA-dependent // inferred from mutant phenotype /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for FBgn0001319.
TRiP has 1 RNAi stocks for FBgn0001319 available for purchase.
VDRC has 5 RNAi stocks for FBgn0001319 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.60None
Head0 ± 00 of 4 0.80None
Eye2 ± 00 of 4 2.97None
Thoracicoabdominal ganglion1 ± 00 of 4 1.70None
Salivary gland6 ± 20 of 4 7.18None
Crop2 ± 00 of 4 2.20None
Midgut3 ± 10 of 4 3.80None
Tubule3 ± 00 of 4 3.70Up
Hindgut1 ± 00 of 4 1.80None
Heart2 ± 00 of 4 2.26None
Fat body3 ± 10 of 4 3.21Up
Ovary1 ± 00 of 4 1.20None
Testis2 ± 00 of 4 2.40None
Male accessory glands5 ± 20 of 4 5.70None
Virgin spermatheca3 ± 00 of 4 3.26Up
Mated spermatheca4 ± 10 of 4 4.42None
Adult carcass2 ± 10 of 4 2.40None
Larval CNS0 ± 00 of 4 0.87None
Larval Salivary gland6 ± 00 of 4 7.00Up
Larval midgut3 ± 10 of 4 3.79None
Larval tubule1 ± 00 of 4 1.80None
Larval hindgut0 ± 00 of 4 0.82None
Larval fat body2 ± 10 of 4 2.70None
Larval trachea0 ± 00 of 4 0.63None
Larval carcass1 ± 00 of 4 1.45None
S2 cells (growing)1 ± 00 of 4 1.66None
Whole fly1 ± 00 of 4

Looking for HDC06452. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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