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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC06792 through 18771 annotations produced 1 hits



(CG30463):

Annotation Number : HDC06792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050463
Gbrowse : chr2R:12603128-12604646 (-) // 100.0 //
Probeset : 1631553_at
Accessions : protein= NP_001097341; /// NP_001097342; /// NP_001097343; /// NP_725602; /// NP_725603;, nucleotide= NM_001103871; /// NM_001103872; /// NM_001103873; /// NM_166188; /// NM_166189;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from sequence or structural similarity //
FlyMine data for FBgn0050463.
VDRC has 2 RNAi stocks for FBgn0050463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.40None
Head1 ± 00 of 4 0.80None
Eye3 ± 10 of 4 2.00None
Thoracicoabdominal ganglion2 ± 00 of 4 1.10None
Salivary gland7 ± 10 of 4 3.80Up
Crop1 ± 00 of 4 0.60None
Midgut5 ± 10 of 4 2.80None
Tubule2 ± 00 of 4 1.50Up
Hindgut4 ± 10 of 4 2.50None
Heart3 ± 11 of 4 1.70None
Fat body9 ± 11 of 4 4.92Up
Ovary1 ± 00 of 4 0.60None
Testis1 ± 00 of 4 1.00None
Male accessory glands7 ± 10 of 4 4.20Up
Virgin spermatheca3 ± 00 of 4 1.84None
Mated spermatheca5 ± 10 of 4 2.77None
Adult carcass4 ± 20 of 4 2.50None
Larval CNS1 ± 10 of 4 0.88None
Larval Salivary gland9 ± 10 of 4 5.15Up
Larval midgut1 ± 00 of 4 0.69None
Larval tubule2 ± 10 of 4 1.10None
Larval hindgut1 ± 00 of 4 0.65None
Larval fat body2 ± 00 of 4 1.30None
Larval trachea3 ± 10 of 4 1.74None
Larval carcass4 ± 00 of 4 2.35None
S2 cells (growing)2 ± 10 of 4 1.59None
Whole fly1 ± 10 of 4

Looking for HDC06792. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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