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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC06801 through 18771 annotations produced 1 hits



Acp53C14c (Acp53C14c):

Annotation Number : HDC06801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053530
Gbrowse : chr2R:12638307-12638739 (-) // 100.0 //
Probeset : 1634651_at
Accessions : protein= NP_001014532;, nucleotide= NM_001014532;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
FlyMine data for FBgn0053530.
VDRC has 3 RNAi stocks for FBgn0053530 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01None
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.03None
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00None
Tubule0 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body1 ± 10 of 4 0.01None
Ovary0 ± 00 of 4 0.00Down
Testis7 ± 31 of 4 0.10None
Male accessory glands6037 ± 3654 of 461.00Up
Virgin spermatheca0 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01None
Adult carcass11 ± 20 of 4 0.10None
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland0 ± 00 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.02None
Larval tubule1 ± 00 of 4 0.00None
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body1 ± 00 of 4 0.00None
Larval trachea1 ± 10 of 4 0.01None
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly99 ± 304 of 4

Looking for HDC06801. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime