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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC07119 through 18771 annotations produced 1 hits



scribbler (sbb):

Annotation Number : HDC07119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010575
Gbrowse : chr2R:14177077-14177347 (-) // 100.0 //
Probeset : 1624001_at
Accessions : protein= NP_001163189; /// NP_001163190; /// NP_001163191; /// NP_524678; /// NP_995883; /// NP_995884;, nucleotide= NM_001169718; /// NM_001169719; /// NM_001169720; /// NM_079939; /// NM_206161; /// NM_206162;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 //
FlyMine data for FBgn0010575.
BDGP gene expression has embryonic in situ data for sbb: 15 pix of staining in 21 body parts.
TRiP has 1 RNAi stocks for FBgn0010575 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010575 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 12 of 4 1.10None
Head4 10 of 4 0.60None
Eye10 00 of 4 1.25None
Thoracicoabdominal ganglion5 00 of 4 0.70None
Salivary gland12 30 of 4 1.50None
Crop10 10 of 4 1.20None
Midgut6 10 of 4 0.80None
Tubule7 10 of 4 0.90None
Hindgut8 10 of 4 1.00None
Heart8 00 of 4 1.08None
Fat body5 60 of 4 0.68None
Ovary6 00 of 4 0.80None
Testis5 10 of 4 0.60None
Male accessory glands15 40 of 4 1.90None
Virgin spermatheca2 00 of 4 0.34Down
Mated spermatheca5 10 of 4 0.67None
Adult carcass11 10 of 4 1.40None
Larval CNS9 13 of 4 1.13None
Larval Salivary gland7 20 of 4 0.89None
Larval midgut10 30 of 4 1.29None
Larval tubule8 10 of 4 1.00None
Larval hindgut6 10 of 4 0.83None
Larval fat body5 10 of 4 0.70None
Larval trachea14 04 of 4 1.78Up
Larval carcass10 20 of 4 1.23None
S2 cells (growing)12 00 of 4 1.52None
Whole fly8 10 of 4

Looking for HDC07119. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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