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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC07559 through 18771 annotations produced 1 hits



defective proboscis extension response (dpr):

Annotation Number : HDC07559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040726
Gbrowse : chr2R:16621672-16622454 (+) // 95.54 //
Probeset : 1625460_s_at
Accessions : protein= NP_995908;, nucleotide= NM_206186;
FlyMine data for FBgn0040726.
VDRC has 2 RNAi stocks for FBgn0040726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 11 of 4 8.20Up
Head3 ± 10 of 4 1.80None
Eye2 ± 10 of 4 1.50None
Thoracicoabdominal ganglion10 ± 20 of 4 5.50Up
Salivary gland8 ± 20 of 4 4.54None
Crop2 ± 10 of 4 1.20None
Midgut1 ± 00 of 4 0.90None
Tubule1 ± 00 of 4 0.70Down
Hindgut2 ± 00 of 4 1.10None
Heart1 ± 10 of 4 0.91None
Fat body3 ± 30 of 4 2.01None
Ovary1 ± 00 of 4 0.70None
Testis3 ± 10 of 4 1.60None
Male accessory glands3 ± 00 of 4 1.90None
Virgin spermatheca1 ± 00 of 4 0.55None
Mated spermatheca2 ± 00 of 4 1.42None
Adult carcass2 ± 00 of 4 1.10None
Larval CNS4 ± 10 of 4 2.13None
Larval Salivary gland1 ± 00 of 4 1.00None
Larval midgut1 ± 00 of 4 0.70None
Larval tubule1 ± 00 of 4 0.60None
Larval hindgut0 ± 00 of 4 0.47None
Larval fat body7 ± 30 of 4 4.00None
Larval trachea1 ± 00 of 4 0.68None
Larval carcass3 ± 10 of 4 1.88None
S2 cells (growing)1 ± 00 of 4 0.57None
Whole fly1 ± 00 of 4

Looking for HDC07559. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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