FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for HDC08568 through 18771 annotations produced 1 hits

alan shepard (shep):

Annotation Number : HDC08568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052423
Gbrowse : chr3L:5263291-5265340 (-) // 99.18 //
Probeset : 1632939_s_at
Accessions : protein= NP_001163350; /// NP_729054; /// NP_729055; /// NP_729056; /// NP_729057;, nucleotide= NM_001169879; /// NM_168111; /// NM_168112; /// NM_168113; /// NM_168114;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0052423.
BDGP gene expression has embryonic in situ data for CG32423: 25 pix of staining in 17 body parts.
TRiP has 2 RNAi stocks for FBgn0052423 available for purchase.
VDRC has 1 RNAi stocks for FBgn0052423 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	129 ± 5	4 of 4	45.70	Up
Head	8 ± 3	0 of 4	2.90	None
Eye	7 ± 2	0 of 4	2.51	None
Thoracicoabdominal ganglion	67 ± 9	4 of 4	23.80	Up
Salivary gland	4 ± 0	0 of 4	1.43	None
Crop	2 ± 0	0 of 4	0.90	None
Midgut	3 ± 0	0 of 4	1.10	None
Tubule	3 ± 0	0 of 4	1.30	Up
Hindgut	5 ± 1	0 of 4	1.80	None
Heart	1 ± 0	0 of 4	0.67	None
Fat body	2 ± 1	0 of 4	0.91	None
Ovary	1 ± 0	0 of 4	0.50	None
Testis	5 ± 1	0 of 4	2.00	None
Male accessory glands	4 ± 0	0 of 4	1.40	None
Virgin spermatheca	2 ± 0	0 of 4	0.73	None
Mated spermatheca	1 ± 0	0 of 4	0.65	None
Adult carcass	3 ± 0	0 of 4	1.30	None
Larval CNS	24 ± 4	1 of 4	8.52	Up
Larval Salivary gland	2 ± 0	0 of 4	0.86	None
Larval midgut	4 ± 1	0 of 4	1.43	None
Larval tubule	3 ± 0	0 of 4	1.10	None
Larval hindgut	2 ± 0	0 of 4	0.85	None
Larval fat body	6 ± 2	0 of 4	2.10	None
Larval trachea	5 ± 2	0 of 4	1.81	None
Larval carcass	2 ± 0	0 of 4	0.93	None
S2 cells (growing)	1 ± 0	0 of 4	0.63	None
Whole fly	2 ± 0	0 of 4

Looking for HDC08568. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720