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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC09471 through 18771 annotations produced 1 hits



(CG33493):

Annotation Number : HDC09471
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053493
Gbrowse : chr3L:10685914-10686223 (-) // 100.0 //
Probeset : 1632911_at
Accessions : protein= NP_996038;, nucleotide= NM_206316;
FlyMine data for FBgn0053493.
VDRC has 5 RNAi stocks for FBgn0053493 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 14 of 4 0.30Down
Head373 104 of 4 3.40Up
Eye153 224 of 4 1.41None
Thoracicoabdominal ganglion36 44 of 4 0.30Down
Salivary gland2 10 of 4 0.03Down
Crop14 14 of 4 0.10Down
Midgut13 30 of 4 0.10Down
Tubule17 12 of 4 0.20Down
Hindgut46 54 of 4 0.40Down
Heart494 414 of 4 4.52Up
Fat body865 444 of 4 7.92Up
Ovary9 01 of 4 0.10Down
Testis13 14 of 4 0.10Down
Male accessory glands13 31 of 4 0.10Down
Virgin spermatheca366 144 of 4 3.35Up
Mated spermatheca311 104 of 4 2.85Up
Adult carcass503 134 of 4 4.60Up
Larval CNS14 43 of 4 0.13Down
Larval Salivary gland37 14 of 4 0.35Down
Larval midgut8 30 of 4 0.07Down
Larval tubule6 20 of 4 0.10Down
Larval hindgut36 44 of 4 0.33Down
Larval fat body1607 1824 of 414.70Up
Larval trachea26 133 of 4 0.24Down
Larval carcass16 11 of 4 0.15Down
S2 cells (growing)5 00 of 4 0.05Down
Whole fly109 84 of 4

Looking for HDC09471. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime