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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC10441 through 18771 annotations produced 1 hits



(CG34248):

Annotation Number : HDC10441
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085277
Gbrowse : chr3L:16263601-16263898 (-) // 100.0 //
Probeset : 1633806_at
Accessions : protein= NP_001097619;, nucleotide= NM_001104149;
FlyMine data for FBgn0085277.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 20 of 4 1.00None
Head17 ± 10 of 4 1.10None
Eye13 ± 13 of 4 0.85None
Thoracicoabdominal ganglion10 ± 20 of 4 0.70None
Salivary gland33 ± 30 of 4 2.20Up
Crop21 ± 11 of 4 1.40None
Midgut52 ± 20 of 4 3.40Up
Tubule23 ± 02 of 4 1.50Up
Hindgut28 ± 30 of 4 1.80Up
Heart14 ± 12 of 4 0.91None
Fat body19 ± 50 of 4 1.29None
Ovary11 ± 22 of 4 0.70None
Testis10 ± 20 of 4 0.70None
Male accessory glands17 ± 30 of 4 1.10None
Virgin spermatheca12 ± 30 of 4 0.80None
Mated spermatheca6 ± 00 of 4 0.43Down
Adult carcass21 ± 40 of 4 1.40None
Larval CNS13 ± 31 of 4 0.90None
Larval Salivary gland14 ± 10 of 4 0.92None
Larval midgut43 ± 70 of 4 2.80Up
Larval tubule25 ± 40 of 4 1.70None
Larval hindgut28 ± 30 of 4 1.87Up
Larval fat body16 ± 51 of 4 1.10None
Larval trachea80 ± 154 of 4 5.23Up
Larval carcass31 ± 13 of 4 2.06Up
S2 cells (growing)29 ± 13 of 4 1.90Up
Whole fly15 ± 21 of 4

Looking for HDC10441. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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