FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for HDC11342 through 18771 annotations produced 1 hits

(CG33288):

Annotation Number : HDC11342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053288
Gbrowse : chr3L:21421158-21426094 (+) // 100.0 //
Probeset : 1624829_at
Accessions : protein= NP_996136;, nucleotide= NM_206414;
Interpro : 0030695 // GTPase regulator activity // inferred from sequence or structural similarity
FlyMine data for FBgn0053288.
VDRC has 3 RNAi stocks for FBgn0053288 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.20	None
Head	17 ± 0	4 of 4	2.80	Up
Eye	4 ± 1	0 of 4	0.71	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.40	None
Salivary gland	4 ± 0	0 of 4	0.66	None
Crop	5 ± 2	0 of 4	0.90	None
Midgut	2 ± 0	0 of 4	0.40	None
Tubule	4 ± 0	0 of 4	0.80	Down
Hindgut	3 ± 0	0 of 4	0.50	None
Heart	1 ± 0	0 of 4	0.24	None
Fat body	7 ± 1	0 of 4	1.25	None
Ovary	1 ± 1	0 of 4	0.30	None
Testis	0 ± 0	0 of 4	0.10	None
Male accessory glands	475 ± 31	4 of 4	74.90	Up
Virgin spermatheca	10 ± 1	1 of 4	1.67	None
Mated spermatheca	13 ± 2	2 of 4	2.06	None
Adult carcass	8 ± 2	0 of 4	1.40	None
Larval CNS	4 ± 3	0 of 4	0.65	None
Larval Salivary gland	9 ± 1	0 of 4	1.42	None
Larval midgut	5 ± 1	0 of 4	0.91	None
Larval tubule	5 ± 1	0 of 4	0.80	None
Larval hindgut	4 ± 1	0 of 4	0.72	None
Larval fat body	2 ± 0	0 of 4	0.40	None
Larval trachea	2 ± 1	0 of 4	0.39	None
Larval carcass	4 ± 2	0 of 4	0.71	None
S2 cells (growing)	1 ± 0	0 of 4	0.28	None
Whole fly	6 ± 2	1 of 4

Looking for HDC11342. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720