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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC15226 through 18771 annotations produced 1 hits



(CG31145):

Annotation Number : HDC15226
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051145
Gbrowse : chr3R:19457012-19461036 (-) // 100.0 //
Probeset : 1636675_at
Accessions : protein= NP_001138101; /// NP_001138102; /// NP_001138103; /// NP_732884; /// NP_788724;, nucleotide= NM_001144629; /// NM_001144630; /// NM_001144631; /// NM_170079; /// NM_176547;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051145.
BDGP gene expression has embryonic in situ data for CG31145: 34 pix of staining in 17 body parts.
VDRC has 2 RNAi stocks for FBgn0051145 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 1.90None
Head0 ± 00 of 4 1.30None
Eye0 ± 00 of 4 1.26None
Thoracicoabdominal ganglion0 ± 00 of 4 1.60None
Salivary gland3 ± 20 of 4 7.79None
Crop0 ± 00 of 4 1.30None
Midgut1 ± 00 of 4 3.10None
Tubule0 ± 00 of 4 2.00None
Hindgut0 ± 00 of 4 1.30None
Heart0 ± 00 of 4 0.95None
Fat body0 ± 00 of 4 1.00None
Ovary0 ± 00 of 4 0.60None
Testis0 ± 00 of 4 0.90None
Male accessory glands0 ± 00 of 4 1.70None
Virgin spermatheca0 ± 00 of 4 1.26None
Mated spermatheca0 ± 00 of 4 1.47None
Adult carcass1 ± 00 of 4 3.90Up
Larval CNS0 ± 00 of 4 0.89None
Larval Salivary gland0 ± 00 of 4 1.79None
Larval midgut1 ± 00 of 4 2.05None
Larval tubule0 ± 00 of 4 1.80None
Larval hindgut0 ± 00 of 4 1.11None
Larval fat body2 ± 10 of 4 4.80None
Larval trachea0 ± 00 of 4 1.53None
Larval carcass0 ± 00 of 4 2.05Up
S2 cells (growing)0 ± 00 of 4 1.16None
Whole fly0 ± 00 of 4

Looking for HDC15226. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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