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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC15672 through 18771 annotations produced 1 hits



(CG34024):

Annotation Number : HDC15672
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054024
Gbrowse : chr3R:21755213-21757739 (+) // 100.0 //
Probeset : 1638925_at
Accessions : protein= NP_001034069;, nucleotide= NM_001038980;
FlyMine data for FBgn0054024.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.50None
Head0 ± 00 of 4 0.70None
Eye2 ± 00 of 4 2.24None
Thoracicoabdominal ganglion1 ± 00 of 4 1.00None
Salivary gland13 ± 20 of 410.98Up
Crop4 ± 10 of 4 3.40None
Midgut5 ± 10 of 4 4.80Up
Tubule3 ± 00 of 4 3.00Up
Hindgut1 ± 00 of 4 1.40None
Heart0 ± 00 of 4 0.67None
Fat body5 ± 20 of 4 4.20Up
Ovary2 ± 00 of 4 1.70None
Testis5 ± 11 of 4 4.10Up
Male accessory glands6 ± 30 of 4 5.20None
Virgin spermatheca2 ± 00 of 4 2.02None
Mated spermatheca3 ± 10 of 4 2.80None
Adult carcass1 ± 00 of 4 1.40None
Larval CNS1 ± 10 of 4 1.35None
Larval Salivary gland3 ± 10 of 4 2.57None
Larval midgut4 ± 00 of 4 3.82Up
Larval tubule3 ± 10 of 4 2.60None
Larval hindgut1 ± 00 of 4 1.22None
Larval fat body0 ± 00 of 4 0.70None
Larval trachea3 ± 20 of 4 2.55None
Larval carcass1 ± 00 of 4 1.51None
S2 cells (growing)2 ± 00 of 4 2.06None
Whole fly1 ± 00 of 4

Looking for HDC15672. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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