FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for HDC16683 through 18771 annotations produced 1 hits

dpr7 (dpr7):

Annotation Number : HDC16683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053481
Gbrowse : chr4:270298-273579 (-) // 100.0 //
Probeset : 1624581_at
Accessions : protein= NP_001096850; /// NP_001096851; /// NP_995591;, nucleotide= NM_001103380; /// NM_001103381; /// NM_205869;
FlyMine data for FBgn0053481.
VDRC has 2 RNAi stocks for FBgn0053481 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	948 ± 17	4 of 4	22.70	Up
Head	430 ± 27	4 of 4	10.30	Up
Eye	1313 ± 71	4 of 4	31.45	Up
Thoracicoabdominal ganglion	850 ± 20	4 of 4	20.40	Up
Salivary gland	3 ± 0	0 of 4	0.08	Down
Crop	53 ± 2	4 of 4	1.30	Up
Midgut	7 ± 2	1 of 4	0.20	Down
Tubule	6 ± 0	0 of 4	0.10	Down
Hindgut	16 ± 1	4 of 4	0.40	Down
Heart	36 ± 1	4 of 4	0.86	Down
Fat body	5 ± 1	1 of 4	0.14	Down
Ovary	2 ± 0	1 of 4	0.10	Down
Testis	5 ± 1	3 of 4	0.10	Down
Male accessory glands	15 ± 3	3 of 4	0.40	Down
Virgin spermatheca	4 ± 1	1 of 4	0.11	Down
Mated spermatheca	3 ± 0	0 of 4	0.09	Down
Adult carcass	25 ± 3	4 of 4	0.60	Down
Larval CNS	583 ± 16	4 of 4	13.98	Up
Larval Salivary gland	2 ± 0	0 of 4	0.07	Down
Larval midgut	19 ± 0	4 of 4	0.46	Down
Larval tubule	1 ± 0	0 of 4	0.00	Down
Larval hindgut	17 ± 1	4 of 4	0.43	Down
Larval fat body	5 ± 2	1 of 4	0.10	Down
Larval trachea	19 ± 25	4 of 4	0.47	None
Larval carcass	12 ± 0	4 of 4	0.29	Down
S2 cells (growing)	1 ± 0	0 of 4	0.04	Down
Whole fly	41 ± 0	4 of 4

Looking for HDC16683. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720