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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC17287 through 18771 annotations produced 1 hits



echinus (ec):

Annotation Number : HDC17287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000542
Gbrowse : chrX:3713180-3715204 (+) // 96.22 //
Probeset : 1626919_at
Accessions : protein= NP_001096877; /// NP_570078; /// NP_726893;, nucleotide= NM_001103407; /// NM_130722; /// NM_166992;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesteras
FlyMine data for FBgn0000542.
VDRC has 1 RNAi stocks for FBgn0000542 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.10None
Head2 ± 10 of 4 1.90None
Eye3 ± 00 of 4 2.02None
Thoracicoabdominal ganglion0 ± 00 of 4 0.60None
Salivary gland5 ± 20 of 4 3.66None
Crop0 ± 00 of 4 0.60None
Midgut0 ± 00 of 4 0.50None
Tubule4 ± 10 of 4 2.80Up
Hindgut1 ± 00 of 4 1.20None
Heart1 ± 00 of 4 0.89None
Fat body2 ± 20 of 4 1.90None
Ovary1 ± 00 of 4 0.80None
Testis1 ± 00 of 4 0.80None
Male accessory glands2 ± 10 of 4 1.30None
Virgin spermatheca2 ± 00 of 4 1.48None
Mated spermatheca6 ± 10 of 4 4.21Up
Adult carcass3 ± 10 of 4 2.10None
Larval CNS0 ± 00 of 4 0.51None
Larval Salivary gland1 ± 00 of 4 0.97None
Larval midgut0 ± 00 of 4 0.36None
Larval tubule3 ± 10 of 4 1.90None
Larval hindgut1 ± 00 of 4 0.90None
Larval fat body3 ± 10 of 4 2.00None
Larval trachea1 ± 20 of 4 1.30None
Larval carcass1 ± 00 of 4 0.89None
S2 cells (growing)1 ± 00 of 4 0.93None
Whole fly1 ± 00 of 4

Looking for HDC17287. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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