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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for HDC18182 through 18771 annotations produced 1 hits



Sp1 (Sp1):

Annotation Number : HDC18182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020378
Gbrowse : chrX:9624596-9625313 (+) // 100.0 //
Probeset : 1627601_at
Accessions : protein= NP_001096927; /// NP_727360;, nucleotide= NM_001103457; /// NM_167200;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0020378.
BDGP gene expression has embryonic in situ data for Sp1: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0020378 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 2.30None
Head1 00 of 4 2.20None
Eye1 00 of 4 2.83None
Thoracicoabdominal ganglion1 00 of 4 2.10None
Salivary gland3 10 of 4 6.72None
Crop0 00 of 4 0.70None
Midgut2 00 of 4 5.20None
Tubule2 00 of 4 4.70Up
Hindgut1 00 of 4 3.70None
Heart0 00 of 4 1.78None
Fat body0 00 of 4 1.22None
Ovary0 00 of 4 0.40None
Testis0 00 of 4 1.30None
Male accessory glands1 00 of 4 3.40None
Virgin spermatheca0 00 of 4 0.56None
Mated spermatheca0 00 of 4 1.72None
Adult carcass2 10 of 4 5.00None
Larval CNS0 00 of 4 1.39None
Larval Salivary gland2 10 of 4 4.83None
Larval midgut3 10 of 4 8.72None
Larval tubule1 00 of 4 2.70None
Larval hindgut0 00 of 4 0.78None
Larval fat body4 20 of 410.00None
Larval trachea1 20 of 4 3.67None
Larval carcass0 00 of 4 1.11None
S2 cells (growing)1 00 of 4 3.00None
Whole fly0 00 of 4

Looking for HDC18182. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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