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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for LD22322 through 18771 annotations produced 1 hits



sidekick (sdk):

Annotation Number : LD22322
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021764
Gbrowse : chrX:638929-643125 (+) // 100.0 //
Probeset : 1628319_s_at
Accessions : protein= NP_001162630; /// NP_001162631; /// NP_477289; /// NP_477290; /// NP_599141; /// NP_599142;, nucleotide= NM_001169159; /// NM_001169160; /// NM_057941; /// NM_057942; /// NM_134314; /// NM_134315;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
FlyMine data for FBgn0021764.
TRiP has 1 RNAi stocks for FBgn0021764 available for purchase.
VDRC has 2 RNAi stocks for FBgn0021764 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 04 of 4 1.00None
Head37 34 of 4 0.60Down
Eye68 24 of 4 1.13None
Thoracicoabdominal ganglion29 04 of 4 0.50Down
Salivary gland29 33 of 4 0.48Down
Crop40 24 of 4 0.70None
Midgut29 14 of 4 0.50Down
Tubule9 02 of 4 0.20Down
Hindgut43 24 of 4 0.70None
Heart45 54 of 4 0.75None
Fat body25 74 of 4 0.43Down
Ovary253 84 of 4 4.20Up
Testis21 34 of 4 0.40Down
Male accessory glands103 144 of 4 1.70Up
Virgin spermatheca4 01 of 4 0.08Down
Mated spermatheca9 13 of 4 0.16Down
Adult carcass31 74 of 4 0.50Down
Larval CNS176 234 of 4 2.92Up
Larval Salivary gland115 74 of 4 1.91Up
Larval midgut57 14 of 4 0.96None
Larval tubule38 34 of 4 0.60Down
Larval hindgut61 14 of 4 1.02None
Larval fat body22 54 of 4 0.40Down
Larval trachea197 204 of 4 3.27Up
Larval carcass85 74 of 4 1.42Up
S2 cells (growing)41 14 of 4 0.69None
Whole fly60 64 of 4

Looking for LD22322. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime