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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for LD31673 through 18771 annotations produced 1 hits



CLASP (chb):

Annotation Number : LD31673
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021760
Gbrowse : chr3L:21168899-21176384 (+) // 100.0 //
Probeset : 1639806_at
Accessions : protein= NP_524651; /// NP_730596; /// NP_730597;, nucleotide= NM_079912; /// NM_168882; /// NM_168883;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from direct assay /// 0000776 // kinetochore // inferred from direct assay /// 0000922 /
FlyMine data for FBgn0021760.
TRiP has 2 RNAi stocks for FBgn0021760 available for purchase.
VDRC has 2 RNAi stocks for FBgn0021760 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain333 64 of 4 1.00None
Head212 114 of 4 0.60Down
Eye163 44 of 4 0.48Down
Thoracicoabdominal ganglion495 94 of 4 1.50Up
Salivary gland532 234 of 4 1.57Up
Crop391 74 of 4 1.20Up
Midgut320 44 of 4 0.90None
Tubule340 304 of 4 1.00None
Hindgut429 54 of 4 1.30Up
Heart176 34 of 4 0.52Down
Fat body336 154 of 4 0.99None
Ovary466 104 of 4 1.40Up
Testis1356 274 of 4 4.00Up
Male accessory glands445 84 of 4 1.30Up
Virgin spermatheca447 124 of 4 1.32Up
Mated spermatheca554 304 of 4 1.64Up
Adult carcass239 104 of 4 0.70Down
Larval CNS446 114 of 4 1.32Up
Larval Salivary gland669 124 of 4 1.98Up
Larval midgut354 184 of 4 1.05None
Larval tubule261 44 of 4 0.80Down
Larval hindgut390 64 of 4 1.15Up
Larval fat body411 1054 of 4 1.20None
Larval trachea309 84 of 4 0.91None
Larval carcass421 44 of 4 1.25Up
S2 cells (growing)475 54 of 4 1.40Up
Whole fly338 124 of 4

Looking for LD31673. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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