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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for LD44795 through 18771 annotations produced 3 hits



fizzy (fzy):

Annotation Number : Stencil:U:4573297:4567654:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrU:4799552-4805195 (-) // 100.0 // /// chrU:7743009-8852414 (-) // 95.73 //
Probeset : 1636855_at
Accessions : protein= NP_477501;, nucleotide= NM_058153;
Pathway : engulfment // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from mutant phenotype /// 0007096 //
Interpro : 0000776 // kinetochore // inferred from direct assay /// 0000776 // kinetochore // traceable author statement /// 000573


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 1.80Up
Head4 20 of 4 1.60None
Eye3 10 of 4 1.21None
Thoracicoabdominal ganglion6 11 of 4 2.10None
Salivary gland13 31 of 4 4.29None
Crop5 20 of 4 1.70None
Midgut4 00 of 4 1.60None
Tubule5 00 of 4 1.60Up
Hindgut9 20 of 4 3.00None
Heart2 10 of 4 0.89None
Fat body11 20 of 4 3.61Up
Ovary2 00 of 4 0.90None
Testis4 01 of 4 1.30None
Male accessory glands4 10 of 4 1.40None
Virgin spermatheca5 10 of 4 1.66None
Mated spermatheca5 20 of 4 1.66None
Adult carcass7 30 of 4 2.30None
Larval CNS6 02 of 4 2.01Up
Larval Salivary gland9 00 of 4 3.01Up
Larval midgut6 10 of 4 1.94None
Larval tubule7 01 of 4 2.40Up
Larval hindgut3 10 of 4 1.00None
Larval fat body11 10 of 4 3.70Up
Larval trachea4 30 of 4 1.42None
Larval carcass4 10 of 4 1.48None
S2 cells (growing)3 10 of 4 1.23None
Whole fly3 00 of 4



fizzy (fzy):

Annotation Number : CG4274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001086
Gbrowse : chr2L:16310928-16313097 (+) // 100.0 //
Probeset : 1636341_at
Accessions : protein= NP_477501;, nucleotide= NM_058153;
Pathway : engulfment // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from mutant phenotype /// 0007096 //
Interpro : 0000776 // kinetochore // inferred from direct assay /// 0000776 // kinetochore // traceable author statement /// 000573
FlyMine data for FBgn0001086.
BDGP gene expression has embryonic in situ data for fzy: 15 pix of staining in 11 body parts.
Homophila reports that CG4274 is a close match (3e-17) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
BioGrid reports that CG4274 interacts with CG5174 CG8204 CG5052 CG3000 .
TRiP has 6 RNAi stocks for FBgn0001086 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001086 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye0 00 of 4 0.00Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland1 00 of 4 0.00Down
Crop4 10 of 4 0.00Down
Midgut6 20 of 4 0.00Down
Tubule3 20 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.01Down
Fat body0 00 of 4 0.00Down
Ovary596 64 of 4 2.50Up
Testis203 64 of 4 0.90None
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca0 00 of 4 0.00Down
Adult carcass6 20 of 4 0.00Down
Larval CNS318 224 of 4 1.34Up
Larval Salivary gland4 10 of 4 0.02Down
Larval midgut13 10 of 4 0.06Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut11 04 of 4 0.05Down
Larval fat body52 214 of 4 0.20Down
Larval trachea58 174 of 4 0.25Down
Larval carcass37 44 of 4 0.16Down
S2 cells (growing)434 164 of 4 1.83Up
Whole fly237 234 of 4



fizzy (fzy):

Annotation Number : LD44795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrUextra:163830-628047 (+) // 96.44 // /// chrUextra:9087842-9088458 (+) // 67.74 // /// chrUextra:3592014-3592614 (+) // 66.41 // /// chr3LHet:2071689-2072589 (+) // 99.44 // /// chr2R:2153048-2153942 (+) // 98.55 // /// chr3L:14309024-14309918 (+) // 98.89 // /// chr3L:16181106-16182000 (+) // 98.89 // /// chr2RHet:1806181-1807075 (-) // 98.67 // /// chr3LHet:172711-173605 (-) // 98.89 // /// chr2L:20976721-20977615 (-) // 98.89 // /// chr2R:768423-769659 (-) // 99.67 // /// chrU:4797865-4798989 (-) // 99.67 // /// chrU:7741301-7742446 (-) // 99.67 // /// chrU:1757874-1758768 (-) // 98.67 // /// chrU:68961-532039 (-) // 91.32 // /// chr3L:4451984-4452878 (-) // 99.0 // /// chr3L:23283688-23284582 (-) // 98.89 // /// chr3L:4450231-4451013 (-) // 86.76 //
Probeset : 1630777_at
Accessions : protein= NP_477501;, nucleotide= NM_058153;
Pathway : engulfment // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from mutant phenotype /// 0007096 //
Interpro : 0000776 // kinetochore // inferred from direct assay /// 0000776 // kinetochore // traceable author statement /// 000573


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 53 of 4 2.60None
Head10 13 of 4 1.80None
Eye4 01 of 4 0.71None
Thoracicoabdominal ganglion11 22 of 4 1.90None
Salivary gland38 53 of 4 6.47Up
Crop22 54 of 4 3.80None
Midgut5 00 of 4 0.90None
Tubule7 01 of 4 1.30Up
Hindgut14 24 of 4 2.50Up
Heart6 12 of 4 1.03None
Fat body26 84 of 4 4.46Up
Ovary3 00 of 4 0.60None
Testis4 10 of 4 0.80None
Male accessory glands15 43 of 4 2.60None
Virgin spermatheca18 14 of 4 3.08Up
Mated spermatheca18 54 of 4 3.20None
Adult carcass11 12 of 4 1.90None
Larval CNS15 64 of 4 2.67Up
Larval Salivary gland7 21 of 4 1.19None
Larval midgut6 02 of 4 1.14None
Larval tubule11 24 of 4 2.00None
Larval hindgut6 03 of 4 1.16None
Larval fat body9 11 of 4 1.60None
Larval trachea7 23 of 4 1.32None
Larval carcass3 00 of 4 0.65None
S2 cells (growing)4 04 of 4 0.79None
Whole fly5 11 of 4

Looking for LD44795. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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