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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for LP10657 through 18771 annotations produced 1 hits



(CG33494):

Annotation Number : LP10657
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053494
Gbrowse : chr3R:21319280-21320883 (-) // 100.0 //
Probeset : 1629181_at
Accessions : protein= NP_996295;, nucleotide= NM_206572;
FlyMine data for FBgn0053494.
VDRC has 2 RNAi stocks for FBgn0053494 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 ± 54 of 4 0.30Down
Head761 ± 524 of 4 3.50Up
Eye475 ± 764 of 4 2.21Up
Thoracicoabdominal ganglion41 ± 34 of 4 0.20Down
Salivary gland31 ± 24 of 4 0.15Down
Crop33 ± 34 of 4 0.20Down
Midgut5 ± 11 of 4 0.00Down
Tubule21 ± 14 of 4 0.10Down
Hindgut61 ± 54 of 4 0.30Down
Heart3331 ± 1414 of 415.49Up
Fat body2435 ± 2714 of 411.32Up
Ovary9 ± 04 of 4 0.00Down
Testis66 ± 54 of 4 0.30Down
Male accessory glands27 ± 24 of 4 0.10Down
Virgin spermatheca1337 ± 294 of 4 6.22Up
Mated spermatheca1524 ± 724 of 4 7.09Up
Adult carcass1004 ± 784 of 4 4.70Up
Larval CNS52 ± 14 of 4 0.24Down
Larval Salivary gland58 ± 64 of 4 0.27Down
Larval midgut51 ± 74 of 4 0.24Down
Larval tubule129 ± 134 of 4 0.60Down
Larval hindgut106 ± 44 of 4 0.49Down
Larval fat body1698 ± 1574 of 4 7.90Up
Larval trachea123 ± 464 of 4 0.58Down
Larval carcass151 ± 34 of 4 0.70Down
S2 cells (growing)1077 ± 454 of 4 5.01Up
Whole fly215 ± 174 of 4

Looking for LP10657. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime