Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C2L000253 through 18771 annotations produced 1 hits



(CG33673):

Annotation Number : S.C2L000253
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053673
Gbrowse : chr2L:1945839-1946643 (-) // 100.0 //
Probeset : 1635801_at
Accessions : protein= NP_001027218;, nucleotide= NM_001032047;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0053673.
TRiP has 1 RNAi stocks for FBgn0053673 available for purchase.
VDRC has 1 RNAi stocks for FBgn0053673 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.40Down
Head3 ± 10 of 4 0.30Down
Eye6 ± 11 of 4 0.50Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.30Down
Salivary gland10 ± 30 of 4 0.83None
Crop5 ± 10 of 4 0.40Down
Midgut7 ± 11 of 4 0.60Down
Tubule5 ± 10 of 4 0.40Down
Hindgut6 ± 10 of 4 0.50Down
Heart1 ± 00 of 4 0.08Down
Fat body5 ± 30 of 4 0.38Down
Ovary2 ± 00 of 4 0.20Down
Testis120 ± 24 of 4 9.20Up
Male accessory glands4 ± 21 of 4 0.30Down
Virgin spermatheca6 ± 20 of 4 0.49None
Mated spermatheca6 ± 10 of 4 0.47Down
Adult carcass2 ± 00 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.22Down
Larval Salivary gland5 ± 00 of 4 0.42Down
Larval midgut4 ± 10 of 4 0.34Down
Larval tubule4 ± 00 of 4 0.40Down
Larval hindgut6 ± 12 of 4 0.52Down
Larval fat body27 ± 101 of 4 2.10None
Larval trachea5 ± 52 of 4 0.39None
Larval carcass3 ± 10 of 4 0.28Down
S2 cells (growing)2 ± 00 of 4 0.16Down
Whole fly13 ± 04 of 4

Looking for S.C2L000253. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime