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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C2L001271 through 18771 annotations produced 1 hits



Ribosomal protein S28-like (RpS28-like):

Annotation Number : S.C2L001271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085211
Gbrowse : chr2L:9436952-9437183 (+) // 100.0 //
Probeset : 1629350_at
Accessions : protein= NP_001097132;, nucleotide= NM_001103662;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation
FlyMine data for FBgn0085211.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.14Down
Crop4 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.05Down
Fat body2 ± 30 of 4 0.06Down
Ovary1 ± 00 of 4 0.00Down
Testis528 ± 214 of 412.90Up
Male accessory glands4 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 10 of 4 0.05Down
Mated spermatheca4 ± 10 of 4 0.12Down
Adult carcass7 ± 40 of 4 0.20Down
Larval CNS3 ± 20 of 4 0.09Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut4 ± 10 of 4 0.10Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body36 ± 173 of 4 0.90None
Larval trachea4 ± 30 of 4 0.10Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)2 ± 00 of 4 0.06Down
Whole fly41 ± 34 of 4

Looking for S.C2L001271. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime