FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for S.C2L001848 through 18771 annotations produced 1 hits

(CG33642):

Annotation Number : S.C2L001848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053642
Gbrowse : chr2L:13529974-13530598 (+) // 100.0 //
Probeset : 1628544_at
Accessions : protein= NP_001027257;, nucleotide= NM_001032086;
FlyMine data for FBgn0053642.
VDRC has 2 RNAi stocks for FBgn0053642 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	1 of 4	0.90	None
Head	4 ± 0	0 of 4	1.10	None
Eye	2 ± 1	0 of 4	0.50	None
Thoracicoabdominal ganglion	5 ± 1	1 of 4	1.40	None
Salivary gland	12 ± 2	0 of 4	3.18	Up
Crop	5 ± 1	2 of 4	1.50	None
Midgut	3 ± 1	0 of 4	0.80	None
Tubule	3 ± 0	0 of 4	0.90	None
Hindgut	4 ± 1	1 of 4	1.10	None
Heart	0 ± 0	0 of 4	0.19	Down
Fat body	11 ± 7	4 of 4	2.93	None
Ovary	2 ± 0	0 of 4	0.60	Down
Testis	1 ± 0	0 of 4	0.40	Down
Male accessory glands	7 ± 1	0 of 4	1.90	None
Virgin spermatheca	6 ± 0	1 of 4	1.54	Up
Mated spermatheca	2 ± 0	0 of 4	0.63	None
Adult carcass	3 ± 1	0 of 4	0.80	None
Larval CNS	3 ± 1	0 of 4	0.84	None
Larval Salivary gland	8 ± 2	0 of 4	2.03	None
Larval midgut	4 ± 0	0 of 4	1.02	None
Larval tubule	5 ± 2	1 of 4	1.40	None
Larval hindgut	5 ± 0	1 of 4	1.24	None
Larval fat body	4 ± 1	0 of 4	1.20	None
Larval trachea	3 ± 1	0 of 4	0.85	None
Larval carcass	2 ± 0	0 of 4	0.50	None
S2 cells (growing)	2 ± 0	1 of 4	0.56	None
Whole fly	4 ± 0	1 of 4

Looking for S.C2L001848. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720